Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33101 | 3' | -56.2 | NC_007497.1 | + | 4856 | 0.66 | 0.604866 |
Target: 5'- cCGCGUCC---AGCCGGUUucGAaGGCCGg -3' miRNA: 3'- -GCGUAGGcacUCGGUCGA--CUaUCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 15082 | 0.66 | 0.604866 |
Target: 5'- uCGCAUCCGaacgGcacGGCgCAGCcGAgcaUGGCCGa -3' miRNA: 3'- -GCGUAGGCa---C---UCG-GUCGaCU---AUCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 6555 | 0.66 | 0.582659 |
Target: 5'- gCGUacaaAUCCuUGGGCUGGCUGAccugcaGGCCGa -3' miRNA: 3'- -GCG----UAGGcACUCGGUCGACUa-----UCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 5575 | 0.66 | 0.582659 |
Target: 5'- gCGCGUCgGcgGcGGCCuGCUGAauccggAGCCGa -3' miRNA: 3'- -GCGUAGgCa-C-UCGGuCGACUa-----UCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 34997 | 0.66 | 0.571615 |
Target: 5'- uCGCAUCCGUguaucgaaucGAGCCGGC-GAUcaacGCgGa -3' miRNA: 3'- -GCGUAGGCA----------CUCGGUCGaCUAu---CGgC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 8674 | 0.67 | 0.517314 |
Target: 5'- aGgAUgCGUGGGCUGGCgucGAcGGCCGg -3' miRNA: 3'- gCgUAgGCACUCGGUCGa--CUaUCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 172 | 0.67 | 0.538819 |
Target: 5'- aGCGUCUGUauguuggucGGGUCgAGCUGG-AGCCGu -3' miRNA: 3'- gCGUAGGCA---------CUCGG-UCGACUaUCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 41216 | 0.68 | 0.47233 |
Target: 5'- aCGCAUCCGgccgcacgucgaauUGAGCCgcgccaAGCcGGUGGUCa -3' miRNA: 3'- -GCGUAGGC--------------ACUCGG------UCGaCUAUCGGc -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 23333 | 0.68 | 0.455093 |
Target: 5'- aGCAUCCGcGAGCgCGGCUGuucguuGuuGg -3' miRNA: 3'- gCGUAGGCaCUCG-GUCGACuau---CggC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 15248 | 0.69 | 0.425531 |
Target: 5'- gCGCAUCCcgcgGAcGCCGGCcGAgcGCCGc -3' miRNA: 3'- -GCGUAGGca--CU-CGGUCGaCUauCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 32832 | 0.7 | 0.335835 |
Target: 5'- gCGCugcaaCGUGAGCC-GCUGAucgagaUAGCCGc -3' miRNA: 3'- -GCGuag--GCACUCGGuCGACU------AUCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 33419 | 0.75 | 0.184237 |
Target: 5'- cCGCGUCCGaUGGGCCAGCgcaggcgcauUGAc-GCCGa -3' miRNA: 3'- -GCGUAGGC-ACUCGGUCG----------ACUauCGGC- -5' |
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33101 | 3' | -56.2 | NC_007497.1 | + | 987 | 0.97 | 0.004439 |
Target: 5'- aCGCGgccgacgaUCCGUGAGCCAGCUGAUAGCCGc -3' miRNA: 3'- -GCGU--------AGGCACUCGGUCGACUAUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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