miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33102 3' -53 NC_007497.1 + 41090 0.66 0.764029
Target:  5'- gCGcCGCGcUGAUcCGCUuCGCGGUGAc- -3'
miRNA:   3'- -GC-GCGCuACUA-GUGAcGUGCCACUuc -5'
33102 3' -53 NC_007497.1 + 21126 0.66 0.749198
Target:  5'- gCGCGCGAUGAcUACgcagaauuccaagGCACGGgcaccGAAa -3'
miRNA:   3'- -GCGCGCUACUaGUGa------------CGUGCCa----CUUc -5'
33102 3' -53 NC_007497.1 + 16798 0.67 0.742764
Target:  5'- aGCuCGcUGAUCGCcGaCACGGUGAAc -3'
miRNA:   3'- gCGcGCuACUAGUGaC-GUGCCACUUc -5'
33102 3' -53 NC_007497.1 + 16031 0.67 0.731948
Target:  5'- gCGCGCGAgcacuacacGAUCGCUGacaACGGguUGAu- -3'
miRNA:   3'- -GCGCGCUa--------CUAGUGACg--UGCC--ACUuc -5'
33102 3' -53 NC_007497.1 + 12163 0.67 0.721025
Target:  5'- uCGCGCGGU--UCGCUGCGCGa----- -3'
miRNA:   3'- -GCGCGCUAcuAGUGACGUGCcacuuc -5'
33102 3' -53 NC_007497.1 + 40817 0.68 0.687746
Target:  5'- gGCGCGAgcGUCGCUGCAgCGGc---- -3'
miRNA:   3'- gCGCGCUacUAGUGACGU-GCCacuuc -5'
33102 3' -53 NC_007497.1 + 7822 0.68 0.687746
Target:  5'- gGCGgGcUGAUCACUGCGCGa----- -3'
miRNA:   3'- gCGCgCuACUAGUGACGUGCcacuuc -5'
33102 3' -53 NC_007497.1 + 18806 0.68 0.642635
Target:  5'- gGCGUG-UGGUCGCUGCAguCGGcGAu- -3'
miRNA:   3'- gCGCGCuACUAGUGACGU--GCCaCUuc -5'
33102 3' -53 NC_007497.1 + 17747 0.69 0.619972
Target:  5'- gGCGCcgGGUGAUCGCUuCACGGcGAu- -3'
miRNA:   3'- gCGCG--CUACUAGUGAcGUGCCaCUuc -5'
33102 3' -53 NC_007497.1 + 8802 0.71 0.498137
Target:  5'- uGCGCGcgGGUCGCUuCGCGGauacgcgGAAGc -3'
miRNA:   3'- gCGCGCuaCUAGUGAcGUGCCa------CUUC- -5'
33102 3' -53 NC_007497.1 + 26891 0.72 0.436214
Target:  5'- aCGaCGCGGUaca-GCUGCGCGGUGAGc -3'
miRNA:   3'- -GC-GCGCUAcuagUGACGUGCCACUUc -5'
33102 3' -53 NC_007497.1 + 1098 1.08 0.001499
Target:  5'- gCGCGCGAUGAUCACUGCACGGUGAAGc -3'
miRNA:   3'- -GCGCGCUACUAGUGACGUGCCACUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.