Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 206 | 0.68 | 0.491139 |
Target: 5'- gUCUguCGCCgcggUGCGCGacgaugugaucgccGAUCGUGCCa -3' miRNA: 3'- -AGGguGUGGaa--GCGCGC--------------CUAGUACGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 1134 | 1.13 | 0.000376 |
Target: 5'- cUCCCACACCUUCGCGCGGAUCAUGCCg -3' miRNA: 3'- -AGGGUGUGGAAGCGCGCCUAGUACGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 1689 | 0.66 | 0.60205 |
Target: 5'- aUCCagUACGCCUUCGUGCGcagCAcucccgGCCg -3' miRNA: 3'- -AGG--GUGUGGAAGCGCGCcuaGUa-----CGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 2632 | 0.67 | 0.544076 |
Target: 5'- gCgCGCugCUcgacggcgagucgaUgGCGCGGAUCGUGUg -3' miRNA: 3'- aGgGUGugGA--------------AgCGCGCCUAGUACGg -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 3519 | 0.69 | 0.424248 |
Target: 5'- aCCUuCACCUUcaCGCGCGcGUCGucuUGCCa -3' miRNA: 3'- aGGGuGUGGAA--GCGCGCcUAGU---ACGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 10432 | 0.68 | 0.51522 |
Target: 5'- gCUCACGCCUUUGCuGCaGGAggUCGagcGCCa -3' miRNA: 3'- aGGGUGUGGAAGCG-CG-CCU--AGUa--CGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 12262 | 0.66 | 0.635272 |
Target: 5'- -gCUAgGCCgcaGCGCGGAU--UGCCg -3' miRNA: 3'- agGGUgUGGaagCGCGCCUAguACGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 15235 | 0.75 | 0.195021 |
Target: 5'- cCCCGCGCCUguggCGCaucccGCGGAcgCcgGCCg -3' miRNA: 3'- aGGGUGUGGAa---GCG-----CGCCUa-GuaCGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 16770 | 0.7 | 0.39611 |
Target: 5'- cCCCGCACCcgCGCcgGCGGAcgagCA-GCCc -3' miRNA: 3'- aGGGUGUGGaaGCG--CGCCUa---GUaCGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 21277 | 0.67 | 0.587712 |
Target: 5'- gUCgCGCugCUggGCGCGGcggcgggcgccggcGUCGUGCa -3' miRNA: 3'- -AGgGUGugGAagCGCGCC--------------UAGUACGg -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 27094 | 0.66 | 0.60205 |
Target: 5'- -aCCGCGCCggcagCGgaGCGGAUacgGCCg -3' miRNA: 3'- agGGUGUGGaa---GCg-CGCCUAguaCGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 27134 | 0.75 | 0.186759 |
Target: 5'- gCCC-CGCCUU-GCGCGGAUCGgcaauagcgaucaccUGCCc -3' miRNA: 3'- aGGGuGUGGAAgCGCGCCUAGU---------------ACGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 27222 | 0.74 | 0.228893 |
Target: 5'- aUCCguCACCUcggCGCGCGGcUCcgGCUg -3' miRNA: 3'- -AGGguGUGGAa--GCGCGCCuAGuaCGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 28505 | 0.67 | 0.580017 |
Target: 5'- gUCgaGCACCUUCGCGCGcgcGGUCGaauggagGCUg -3' miRNA: 3'- -AGggUGUGGAAGCGCGC---CUAGUa------CGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 28728 | 0.72 | 0.284513 |
Target: 5'- gCCCGCGCCaUUCGCGCaucaacccguugucaGcGAUCGUGUa -3' miRNA: 3'- aGGGUGUGG-AAGCGCG---------------C-CUAGUACGg -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 29869 | 0.71 | 0.369203 |
Target: 5'- gCCCGCAgCacUCGCGCGGAUacucggcgaGUGCg -3' miRNA: 3'- aGGGUGUgGa-AGCGCGCCUAg--------UACGg -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 30101 | 0.68 | 0.483913 |
Target: 5'- aUCUCGuucaugcuuCACCUcgCGCGCGGAgCAUGgCg -3' miRNA: 3'- -AGGGU---------GUGGAa-GCGCGCCUaGUACgG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 30219 | 0.72 | 0.281637 |
Target: 5'- gCCUugcauCACCUUCGCcgcgaaguagucGCGGAgcgaCAUGCCg -3' miRNA: 3'- aGGGu----GUGGAAGCG------------CGCCUa---GUACGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 33204 | 0.67 | 0.591016 |
Target: 5'- aUCgACGCCUgauCGCGGAUCAgGCUc -3' miRNA: 3'- aGGgUGUGGAagcGCGCCUAGUaCGG- -5' |
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33102 | 5' | -55.9 | NC_007497.1 | + | 33239 | 0.67 | 0.558159 |
Target: 5'- gUCCgACAgCUUCGUGCGcuUCGccGCCa -3' miRNA: 3'- -AGGgUGUgGAAGCGCGCcuAGUa-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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