Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 33103 | 3' | -55 | NC_007497.1 | + | 35812 | 0.74 | 0.273168 |
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Target: 5'- gCCGUcGCGuCGAGCggcuGCCGCGUugCUUGCg -3' miRNA: 3'- gGGUA-CGUuGCUCG----CGGCGCA--GAACG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 30990 | 0.77 | 0.178489 |
|
Target: 5'- gCCCAUGCGGCG-GCcccuGCgGCGUCccgUGCg -3' miRNA: 3'- -GGGUACGUUGCuCG----CGgCGCAGa--ACG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 31089 | 0.77 | 0.178489 |
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Target: 5'- gCCCGUGCGGCGAcccaUGCgGCGUCccgUGCg -3' miRNA: 3'- -GGGUACGUUGCUc---GCGgCGCAGa--ACG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 42355 | 0.78 | 0.15123 |
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Target: 5'- gCCAUGUuuCGcAGCGCuCGCGUCUcGCg -3' miRNA: 3'- gGGUACGuuGC-UCGCG-GCGCAGAaCG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 21294 | 0.78 | 0.147071 |
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Target: 5'- ----gGCGGCGGGCGCCGgCGUCgUGCa -3' miRNA: 3'- ggguaCGUUGCUCGCGGC-GCAGaACG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 788 | 0.8 | 0.102956 |
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Target: 5'- gCCCAUGCGgcaucgaucacgccgACG-GCGCC-CGUCUUGCu -3' miRNA: 3'- -GGGUACGU---------------UGCuCGCGGcGCAGAACG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 4560 | 1.14 | 0.000374 |
|
Target: 5'- gCCCAUGCAACGAGCGCCGCGUCUUGCg -3' miRNA: 3'- -GGGUACGUUGCUCGCGGCGCAGAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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