Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 33103 | 3' | -55 | NC_007497.1 | + | 4031 | 0.66 | 0.701236 |
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Target: 5'- gCCGUGCcgucuCGGcCGCCGCGUCc--- -3' miRNA: 3'- gGGUACGuu---GCUcGCGGCGCAGaacg -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 38514 | 0.66 | 0.701236 |
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Target: 5'- aCCCAggugGUAGCGAGuCGCUgGCGcCacgGCu -3' miRNA: 3'- -GGGUa---CGUUGCUC-GCGG-CGCaGaa-CG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 14219 | 0.66 | 0.701236 |
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Target: 5'- -aUcgGCGGCGAuGUGCUGCGUUUucaugggcaccUGCa -3' miRNA: 3'- ggGuaCGUUGCU-CGCGGCGCAGA-----------ACG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 12625 | 0.65 | 0.711036 |
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Target: 5'- aCgCGUcGCAgaugaugGCGAGCGCCGag-UUUGCg -3' miRNA: 3'- -GgGUA-CGU-------UGCUCGCGGCgcaGAACG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 29697 | 0.65 | 0.712122 |
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Target: 5'- gCCAUGCu-CGGcuGCGCCGUGccguUCggaUGCg -3' miRNA: 3'- gGGUACGuuGCU--CGCGGCGC----AGa--ACG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 15263 | 0.65 | 0.712122 |
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Target: 5'- gCCG-GC--CGAGCGCCGCGag--GCg -3' miRNA: 3'- gGGUaCGuuGCUCGCGGCGCagaaCG- -5' |
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| 33103 | 3' | -55 | NC_007497.1 | + | 27895 | 0.65 | 0.712122 |
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Target: 5'- aCC-UGCGagaACGAGCGC-GCGUCg--- -3' miRNA: 3'- gGGuACGU---UGCUCGCGgCGCAGaacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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