Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33103 | 3' | -55 | NC_007497.1 | + | 35812 | 0.74 | 0.273168 |
Target: 5'- gCCGUcGCGuCGAGCggcuGCCGCGUugCUUGCg -3' miRNA: 3'- gGGUA-CGUuGCUCG----CGGCGCA--GAACG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 38514 | 0.66 | 0.701236 |
Target: 5'- aCCCAggugGUAGCGAGuCGCUgGCGcCacgGCu -3' miRNA: 3'- -GGGUa---CGUUGCUC-GCGG-CGCaGaa-CG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 40478 | 0.66 | 0.67927 |
Target: 5'- -gUAUGCAGCGA-CGCUGCaacGUCUUcGCc -3' miRNA: 3'- ggGUACGUUGCUcGCGGCG---CAGAA-CG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 40650 | 0.71 | 0.376769 |
Target: 5'- aCCGU-CGACGAGUGCCGCGa---GCg -3' miRNA: 3'- gGGUAcGUUGCUCGCGGCGCagaaCG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 41076 | 0.69 | 0.493306 |
Target: 5'- gCCgAUGUuGCGaAGCGCCGCG-CUgauccGCu -3' miRNA: 3'- -GGgUACGuUGC-UCGCGGCGCaGAa----CG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 42355 | 0.78 | 0.15123 |
Target: 5'- gCCAUGUuuCGcAGCGCuCGCGUCUcGCg -3' miRNA: 3'- gGGUACGuuGC-UCGCG-GCGCAGAaCG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 42596 | 0.67 | 0.646005 |
Target: 5'- gCCGUGCuauuuGCGcGUGCCcgGUGUCUgccgGCu -3' miRNA: 3'- gGGUACGu----UGCuCGCGG--CGCAGAa---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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