Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33103 | 3' | -55 | NC_007497.1 | + | 30901 | 0.74 | 0.273167 |
Target: 5'- aCCCAUGCGGCGuccccugcggcGGCccauGCgGCGUCcgUGCg -3' miRNA: 3'- -GGGUACGUUGC-----------UCG----CGgCGCAGa-ACG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 30945 | 0.72 | 0.333988 |
Target: 5'- gCCCAUGCGGCGcccccugcggcGGCcccuGCgGCGUCccgUGCg -3' miRNA: 3'- -GGGUACGUUGC-----------UCG----CGgCGCAGa--ACG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 1691 | 0.71 | 0.376769 |
Target: 5'- gUCCGUGCug-GAGCGCCGCaaagagaUUGCg -3' miRNA: 3'- -GGGUACGuugCUCGCGGCGcag----AACG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 31035 | 0.71 | 0.376769 |
Target: 5'- aCCCAUGCGGCGucccgugcGGCcccuGCgGCGUCcccUGCg -3' miRNA: 3'- -GGGUACGUUGC--------UCG----CGgCGCAGa--ACG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 40650 | 0.71 | 0.376769 |
Target: 5'- aCCGU-CGACGAGUGCCGCGa---GCg -3' miRNA: 3'- gGGUAcGUUGCUCGCGGCGCagaaCG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 8445 | 0.69 | 0.482934 |
Target: 5'- -gCAUGCAGCGAugGUCGCGUCg-GCa -3' miRNA: 3'- ggGUACGUUGCUcgCGGCGCAGaaCG- -5' |
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33103 | 3' | -55 | NC_007497.1 | + | 12625 | 0.65 | 0.711036 |
Target: 5'- aCgCGUcGCAgaugaugGCGAGCGCCGag-UUUGCg -3' miRNA: 3'- -GgGUA-CGU-------UGCUCGCGGCgcaGAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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