Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33103 | 5' | -53.8 | NC_007497.1 | + | 29722 | 0.66 | 0.700554 |
|
Target: 5'- uGGGCAUCgcggcccucCGCGAUGUaCUGgCGGGCc -3' miRNA: 3'- -CUCGUAGaa-------GUGCUACA-GGC-GUCCGu -5' |
|||||||
| 33103 | 5' | -53.8 | NC_007497.1 | + | 6753 | 0.66 | 0.689308 |
|
Target: 5'- cGGGUAUCgcaacCGcCGGUGUCCGUguucggacgaaGGGCAa -3' miRNA: 3'- -CUCGUAGaa---GU-GCUACAGGCG-----------UCCGU- -5' |
|||||||
| 33103 | 5' | -53.8 | NC_007497.1 | + | 27571 | 0.67 | 0.66665 |
|
Target: 5'- cGAGCGUCUgccugCGCGGgcggCUGCGGGgCGg -3' miRNA: 3'- -CUCGUAGAa----GUGCUaca-GGCGUCC-GU- -5' |
|||||||
| 33103 | 5' | -53.8 | NC_007497.1 | + | 21093 | 0.68 | 0.608458 |
|
Target: 5'- cGGGCuAUCaaUCACGGUGUgcggguaCUGCGGGCGc -3' miRNA: 3'- -CUCG-UAGa-AGUGCUACA-------GGCGUCCGU- -5' |
|||||||
| 33103 | 5' | -53.8 | NC_007497.1 | + | 30451 | 0.69 | 0.52754 |
|
Target: 5'- cGAGCA-CUUCgucgacuuuccugcGCGAUGcagagCCGCGGGCc -3' miRNA: 3'- -CUCGUaGAAG--------------UGCUACa----GGCGUCCGu -5' |
|||||||
| 33103 | 5' | -53.8 | NC_007497.1 | + | 14920 | 0.7 | 0.445864 |
|
Target: 5'- cGAGUAUCcgCGCGAgugCUGCGGGCu -3' miRNA: 3'- -CUCGUAGaaGUGCUacaGGCGUCCGu -5' |
|||||||
| 33103 | 5' | -53.8 | NC_007497.1 | + | 4597 | 1.09 | 0.000953 |
|
Target: 5'- cGAGCAUCUUCACGAUGUCCGCAGGCAu -3' miRNA: 3'- -CUCGUAGAAGUGCUACAGGCGUCCGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home