miRNA: 3'- -UC-GUCGUAGACUu--UCACGa-AGGUGCa -5'
miRNA: 3'- uCGUCGUAGaCUuuCaCGaaGGUGCa -5'
miRNA: 3'- -UCGUCGU--AGACUUUCaCGAaGgUGCa -5'
miRNA: 3'- -UCGUCGUAGACUUUCACGAAGGUGCA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33104 | 3' | -50.9 | NC_007497.1 | + | 43512 | 0.66 | 0.820539 |
|
Target: 5'- aAGuCGGCAUUUGAugcAGUGCggUUCGCGc -3' miRNA: 3'- -UC-GUCGUAGACUu--UCACGa-AGGUGCa -5' |
|||||||
| 33104 | 3' | -50.9 | NC_007497.1 | + | 1423 | 0.69 | 0.690239 |
|
Target: 5'- cGCAGCGUCcGAuuGcGCggCCACGg -3' miRNA: 3'- uCGUCGUAGaCUuuCaCGaaGGUGCa -5' |
|||||||
| 33104 | 3' | -50.9 | NC_007497.1 | + | 41776 | 0.7 | 0.596769 |
|
Target: 5'- aGGCGGCAauUCUGAAAGcGCU-CgGCGa -3' miRNA: 3'- -UCGUCGU--AGACUUUCaCGAaGgUGCa -5' |
|||||||
| 33104 | 3' | -50.9 | NC_007497.1 | + | 5936 | 1.09 | 0.001817 |
|
Target: 5'- gAGCAGCAUCUGAAAGUGCUUCCACGUg -3' miRNA: 3'- -UCGUCGUAGACUUUCACGAAGGUGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home