miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33104 5' -51.4 NC_007497.1 + 12904 0.66 0.879844
Target:  5'- gCGCGCGGAcaugaucgccGCAauCCUUGcGUUUCUUGa -3'
miRNA:   3'- aGUGCGCUU----------CGU--GGAGCaCAAAGAGC- -5'
33104 5' -51.4 NC_007497.1 + 2796 0.66 0.863503
Target:  5'- gCGCGCGAGGUguuucACCUgCGUGacUUgUCGa -3'
miRNA:   3'- aGUGCGCUUCG-----UGGA-GCACa-AAgAGC- -5'
33104 5' -51.4 NC_007497.1 + 12176 0.66 0.85494
Target:  5'- -uGCGCGAgcggcauuGGCGCCU-GUGUUcgguuggCUCGg -3'
miRNA:   3'- agUGCGCU--------UCGUGGAgCACAAa------GAGC- -5'
33104 5' -51.4 NC_007497.1 + 43710 0.66 0.853197
Target:  5'- gCGCGCGcuGCcCCUCGUGaccugccgugCUCGu -3'
miRNA:   3'- aGUGCGCuuCGuGGAGCACaaa-------GAGC- -5'
33104 5' -51.4 NC_007497.1 + 37123 0.67 0.827783
Target:  5'- gUCG-GCGAAGguCACCcgaaacaCGUGUUUCUCGc -3'
miRNA:   3'- -AGUgCGCUUC--GUGGa------GCACAAAGAGC- -5'
33104 5' -51.4 NC_007497.1 + 43580 0.67 0.827783
Target:  5'- ---gGCGAAGCGCCUgCGggGUgaaucgCUCGg -3'
miRNA:   3'- agugCGCUUCGUGGA-GCa-CAaa----GAGC- -5'
33104 5' -51.4 NC_007497.1 + 34640 0.67 0.818274
Target:  5'- gUCGcCGCGGuGGCGCCUCGUucGgcgcgCUCGc -3'
miRNA:   3'- -AGU-GCGCU-UCGUGGAGCA--Caaa--GAGC- -5'
33104 5' -51.4 NC_007497.1 + 42536 0.67 0.808555
Target:  5'- cCGUGCGAAGCGCCcgacCGUGgccgagggCUCGa -3'
miRNA:   3'- aGUGCGCUUCGUGGa---GCACaaa-----GAGC- -5'
33104 5' -51.4 NC_007497.1 + 1443 0.68 0.767808
Target:  5'- uUCAuCGCGAAGCACCUCaacGUcgagaUCGg -3'
miRNA:   3'- -AGU-GCGCUUCGUGGAGca-CAaag--AGC- -5'
33104 5' -51.4 NC_007497.1 + 33351 0.7 0.634403
Target:  5'- -uGCGCGAuccGCugCUCGaUGU-UCUCGa -3'
miRNA:   3'- agUGCGCUu--CGugGAGC-ACAaAGAGC- -5'
33104 5' -51.4 NC_007497.1 + 44452 0.71 0.577522
Target:  5'- aUCuCGCGAAGCAuCCgcauugCGUGUUcugcuugcgugaUCUCGg -3'
miRNA:   3'- -AGuGCGCUUCGU-GGa-----GCACAA------------AGAGC- -5'
33104 5' -51.4 NC_007497.1 + 5970 0.97 0.015139
Target:  5'- uUCACGCGAAGCACCUCGU-UUUCUCGa -3'
miRNA:   3'- -AGUGCGCUUCGUGGAGCAcAAAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.