miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33105 3' -50.1 NC_007497.1 + 3848 0.66 0.917609
Target:  5'- gGGGCUugcGGCGUCGgcagccucggucaucGCgaugGCCGg--CGACg -3'
miRNA:   3'- -UCCGA---UUGCAGC---------------UGa---UGGCaaaGCUG- -5'
33105 3' -50.1 NC_007497.1 + 36329 0.66 0.915005
Target:  5'- cGGCUGAuCGUCGGCUGCgGa------ -3'
miRNA:   3'- uCCGAUU-GCAGCUGAUGgCaaagcug -5'
33105 3' -50.1 NC_007497.1 + 16608 0.66 0.915005
Target:  5'- cGGCg--UGuUCGGCUACCGagUCGAg -3'
miRNA:   3'- uCCGauuGC-AGCUGAUGGCaaAGCUg -5'
33105 3' -50.1 NC_007497.1 + 4617 0.66 0.899105
Target:  5'- cAGGCUGcCGUCGACgagGCCaacaucaagaucgCGGCa -3'
miRNA:   3'- -UCCGAUuGCAGCUGa--UGGcaaa---------GCUG- -5'
33105 3' -50.1 NC_007497.1 + 32621 0.67 0.893955
Target:  5'- cGGGCcguuacuACGUCuucCUcccGCCGUUUCGACc -3'
miRNA:   3'- -UCCGau-----UGCAGcu-GA---UGGCAAAGCUG- -5'
33105 3' -50.1 NC_007497.1 + 38019 0.68 0.853151
Target:  5'- cGGCgcggAGCGUCGAa-ACgGUagUCGACg -3'
miRNA:   3'- uCCGa---UUGCAGCUgaUGgCAa-AGCUG- -5'
33105 3' -50.1 NC_007497.1 + 15694 0.68 0.844194
Target:  5'- uGGCUGuuuCGUCGACagccgagGCCGUgcgGGCa -3'
miRNA:   3'- uCCGAUu--GCAGCUGa------UGGCAaagCUG- -5'
33105 3' -50.1 NC_007497.1 + 37038 0.68 0.843285
Target:  5'- -cGCUGuACGUCGACgucacgaUGCCG--UCGACg -3'
miRNA:   3'- ucCGAU-UGCAGCUG-------AUGGCaaAGCUG- -5'
33105 3' -50.1 NC_007497.1 + 40951 0.68 0.834993
Target:  5'- cGGCcgcACGUCGAC-GCCGcaUUUGACg -3'
miRNA:   3'- uCCGau-UGCAGCUGaUGGCa-AAGCUG- -5'
33105 3' -50.1 NC_007497.1 + 23223 0.7 0.743039
Target:  5'- aGGGCgu-CGcCGGCUGCCGggcuucCGGCg -3'
miRNA:   3'- -UCCGauuGCaGCUGAUGGCaaa---GCUG- -5'
33105 3' -50.1 NC_007497.1 + 8366 0.71 0.687044
Target:  5'- -cGCaGAUGUCGGCUGCCGagUUCGcACu -3'
miRNA:   3'- ucCGaUUGCAGCUGAUGGCa-AAGC-UG- -5'
33105 3' -50.1 NC_007497.1 + 8021 0.71 0.664151
Target:  5'- gAGGCggcgGGCGUCGA--GCCGga-CGACg -3'
miRNA:   3'- -UCCGa---UUGCAGCUgaUGGCaaaGCUG- -5'
33105 3' -50.1 NC_007497.1 + 7737 0.72 0.641126
Target:  5'- cGGCggcCGUCGACggcAUCGUgacgUCGACg -3'
miRNA:   3'- uCCGauuGCAGCUGa--UGGCAa---AGCUG- -5'
33105 3' -50.1 NC_007497.1 + 7406 0.73 0.572187
Target:  5'- aAGGUcGAagUGUCGAagACCGUUUCGACg -3'
miRNA:   3'- -UCCGaUU--GCAGCUgaUGGCAAAGCUG- -5'
33105 3' -50.1 NC_007497.1 + 1839 0.73 0.549533
Target:  5'- aAGGCcGGCGUCGACccgGCCGguaUCGGg -3'
miRNA:   3'- -UCCGaUUGCAGCUGa--UGGCaa-AGCUg -5'
33105 3' -50.1 NC_007497.1 + 44546 0.75 0.472887
Target:  5'- uGGGCUGGCGcCGGCUGCUGa---GACu -3'
miRNA:   3'- -UCCGAUUGCaGCUGAUGGCaaagCUG- -5'
33105 3' -50.1 NC_007497.1 + 8682 0.87 0.090267
Target:  5'- uGGGCUGGCGUCGACgGCCGg--CGGCu -3'
miRNA:   3'- -UCCGAUUGCAGCUGaUGGCaaaGCUG- -5'
33105 3' -50.1 NC_007497.1 + 6757 1.11 0.001999
Target:  5'- aAGGCUAACGUCGACUACCGUUUCGACg -3'
miRNA:   3'- -UCCGAUUGCAGCUGAUGGCAAAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.