Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33105 | 5' | -52.3 | NC_007497.1 | + | 398 | 0.71 | 0.542306 |
Target: 5'- --uUCGuccacAAGCGGCUggGCGAGGGCgGc -3' miRNA: 3'- gcuAGC-----UUCGCUGAaaUGCUCCCGgC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 1994 | 0.68 | 0.751229 |
Target: 5'- gCGAUCGAAgGCGACgaagccccugACGGGGcGuuGu -3' miRNA: 3'- -GCUAGCUU-CGCUGaaa-------UGCUCC-CggC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 6038 | 0.68 | 0.75335 |
Target: 5'- gCGAUCGAGGcCGGCacUGC-AGGGCa- -3' miRNA: 3'- -GCUAGCUUC-GCUGaaAUGcUCCCGgc -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 6792 | 1.09 | 0.001855 |
Target: 5'- cCGAUCGAAGCGACUUUACGAGGGCCGc -3' miRNA: 3'- -GCUAGCUUCGCUGAAAUGCUCCCGGC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 6927 | 0.66 | 0.823607 |
Target: 5'- cCGGUCGcccaGGGCGACau--CGAGugccGGCCGg -3' miRNA: 3'- -GCUAGC----UUCGCUGaaauGCUC----CCGGC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 8016 | 0.68 | 0.731926 |
Target: 5'- uGcgCGAGGCGGCgg-GCGucGaGCCGg -3' miRNA: 3'- gCuaGCUUCGCUGaaaUGCucC-CGGC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 8791 | 0.67 | 0.763873 |
Target: 5'- gCGAUCGAGGCuGC---GCGcGGGUCGc -3' miRNA: 3'- -GCUAGCUUCGcUGaaaUGCuCCCGGC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 9236 | 0.7 | 0.631721 |
Target: 5'- uCGAUUGAAcgGGCUUgaUGCGuGGGGCCGa -3' miRNA: 3'- -GCUAGCUUcgCUGAA--AUGC-UCCCGGC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 10702 | 0.66 | 0.832887 |
Target: 5'- -cGUCGcGGCGACgc-GCGGGGGagaCGa -3' miRNA: 3'- gcUAGCuUCGCUGaaaUGCUCCCg--GC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 10963 | 0.69 | 0.664402 |
Target: 5'- aCGAUCGAgAGCGACac--CGAGucaucgaGGCCGa -3' miRNA: 3'- -GCUAGCU-UCGCUGaaauGCUC-------CCGGC- -5' |
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33105 | 5' | -52.3 | NC_007497.1 | + | 17249 | 0.67 | 0.762827 |
Target: 5'- -cAUCGcGAGCGugUUccgcggcaucgccUACuGGGGGCCGg -3' miRNA: 3'- gcUAGC-UUCGCugAA-------------AUG-CUCCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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