miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33106 3' -52.9 NC_007497.1 + 33301 0.66 0.788531
Target:  5'- ----cGCCGAGGCGGUGCGCcuaugcgCGUg -3'
miRNA:   3'- gccuuUGGCUCUGCCGCGUGaa-----GUAa -5'
33106 3' -52.9 NC_007497.1 + 2886 0.66 0.788531
Target:  5'- gCGGAgcaAGCCGAG-CGcGC-CGCUUCAc- -3'
miRNA:   3'- -GCCU---UUGGCUCuGC-CGcGUGAAGUaa -5'
33106 3' -52.9 NC_007497.1 + 28118 0.66 0.767808
Target:  5'- gCGGucACgCGAG-CGGCGCGCUcccggCGUa -3'
miRNA:   3'- -GCCuuUG-GCUCuGCCGCGUGAa----GUAa -5'
33106 3' -52.9 NC_007497.1 + 5812 0.66 0.746483
Target:  5'- aCGGugcCCGAGcgguCGGCGCACUg---- -3'
miRNA:   3'- -GCCuuuGGCUCu---GCCGCGUGAaguaa -5'
33106 3' -52.9 NC_007497.1 + 17669 0.66 0.746483
Target:  5'- aGGAGACaacauaGAGuACGGCGCGagcUCAUc -3'
miRNA:   3'- gCCUUUGg-----CUC-UGCCGCGUga-AGUAa -5'
33106 3' -52.9 NC_007497.1 + 40702 0.66 0.746483
Target:  5'- cCGGAAGgaaCGGGAaGGCGCGCgagcUCAUc -3'
miRNA:   3'- -GCCUUUg--GCUCUgCCGCGUGa---AGUAa -5'
33106 3' -52.9 NC_007497.1 + 40573 0.67 0.713593
Target:  5'- aCGGcgcauGGACCGGGAauaccCGGCGCGCgcCAUc -3'
miRNA:   3'- -GCC-----UUUGGCUCU-----GCCGCGUGaaGUAa -5'
33106 3' -52.9 NC_007497.1 + 7583 0.68 0.668588
Target:  5'- aGGAAGCCGGcuUGGUGCACgcaCAUg -3'
miRNA:   3'- gCCUUUGGCUcuGCCGCGUGaa-GUAa -5'
33106 3' -52.9 NC_007497.1 + 16211 0.68 0.634403
Target:  5'- uGGGccgccGCCGAGGCuGUGUGCUUCGUUc -3'
miRNA:   3'- gCCUu----UGGCUCUGcCGCGUGAAGUAA- -5'
33106 3' -52.9 NC_007497.1 + 30033 0.69 0.58884
Target:  5'- aCGGA--UCGAcGuCGGUGCGCUUCGUg -3'
miRNA:   3'- -GCCUuuGGCU-CuGCCGCGUGAAGUAa -5'
33106 3' -52.9 NC_007497.1 + 16172 0.7 0.532821
Target:  5'- cCGGcacgcACCGAGACGGCGacguuCUUCGa- -3'
miRNA:   3'- -GCCuu---UGGCUCUGCCGCgu---GAAGUaa -5'
33106 3' -52.9 NC_007497.1 + 40761 0.71 0.457983
Target:  5'- gCGGcgGCCGAGACGGCacgGCGCga-AUUg -3'
miRNA:   3'- -GCCuuUGGCUCUGCCG---CGUGaagUAA- -5'
33106 3' -52.9 NC_007497.1 + 7050 0.72 0.407151
Target:  5'- uCGGAAACauugccuCGGGACGGCGCAUagcUCAg- -3'
miRNA:   3'- -GCCUUUG-------GCUCUGCCGCGUGa--AGUaa -5'
33106 3' -52.9 NC_007497.1 + 17999 0.73 0.379868
Target:  5'- gCGGcGAUCGAcGACGGCGCGCagaUUCAg- -3'
miRNA:   3'- -GCCuUUGGCU-CUGCCGCGUG---AAGUaa -5'
33106 3' -52.9 NC_007497.1 + 43324 0.74 0.335788
Target:  5'- gGGAGaucACCGAGACGGaGCACggCGUg -3'
miRNA:   3'- gCCUU---UGGCUCUGCCgCGUGaaGUAa -5'
33106 3' -52.9 NC_007497.1 + 6874 1.05 0.002295
Target:  5'- cCGGAAACCGAGACGGCGCACUUCAUUc -3'
miRNA:   3'- -GCCUUUGGCUCUGCCGCGUGAAGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.