miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33106 5' -57.9 NC_007497.1 + 32433 0.66 0.55218
Target:  5'- cGAcgUGCCCggccccgugacgugGCCG---CCGGUCGCa -3'
miRNA:   3'- cCUuaGCGGGa-------------CGGCuagGGCCAGCG- -5'
33106 5' -57.9 NC_007497.1 + 40616 0.66 0.537423
Target:  5'- cGAAUCGUCCguUGCCGcagCUCGGg-GCg -3'
miRNA:   3'- cCUUAGCGGG--ACGGCua-GGGCCagCG- -5'
33106 5' -57.9 NC_007497.1 + 4400 0.66 0.526966
Target:  5'- -----gGCCCUGaCGggCCCGGUUGg -3'
miRNA:   3'- ccuuagCGGGACgGCuaGGGCCAGCg -5'
33106 5' -57.9 NC_007497.1 + 38008 0.67 0.520728
Target:  5'- cGAGUCuGCCUUGCCcuucGUCCgaacacggacaccggCGGUUGCg -3'
miRNA:   3'- cCUUAG-CGGGACGGc---UAGG---------------GCCAGCG- -5'
33106 5' -57.9 NC_007497.1 + 16905 0.67 0.516586
Target:  5'- ---cUCGUUCUcGCaGGUCCCGGUgCGCu -3'
miRNA:   3'- ccuuAGCGGGA-CGgCUAGGGCCA-GCG- -5'
33106 5' -57.9 NC_007497.1 + 32463 0.67 0.485966
Target:  5'- gGGAAUUGCaCUcgacuuggcgggUGCCG-UCCuCGGUgGCa -3'
miRNA:   3'- -CCUUAGCG-GG------------ACGGCuAGG-GCCAgCG- -5'
33106 5' -57.9 NC_007497.1 + 17644 0.67 0.474955
Target:  5'- aGGuGAUCGCUaUUGCCGAUCCgcgcaaggcggggCGG-CGCa -3'
miRNA:   3'- -CC-UUAGCGG-GACGGCUAGG-------------GCCaGCG- -5'
33106 5' -57.9 NC_007497.1 + 32674 0.68 0.446545
Target:  5'- -----aGCCC-GCgGAaauccagcuUCCCGGUCGCu -3'
miRNA:   3'- ccuuagCGGGaCGgCU---------AGGGCCAGCG- -5'
33106 5' -57.9 NC_007497.1 + 38744 0.68 0.446545
Target:  5'- gGGuuUUGCCCUGCagugccggccuCGAUCgCGGUgGUc -3'
miRNA:   3'- -CCuuAGCGGGACG-----------GCUAGgGCCAgCG- -5'
33106 5' -57.9 NC_007497.1 + 37307 0.68 0.436969
Target:  5'- ----cCGCCCUGCC-AUUgaaucgucuugCCGGUCGUa -3'
miRNA:   3'- ccuuaGCGGGACGGcUAG-----------GGCCAGCG- -5'
33106 5' -57.9 NC_007497.1 + 23224 0.68 0.436969
Target:  5'- gGGcGUCGCCggCUGCCGGgcUUCCGG-CGg -3'
miRNA:   3'- -CCuUAGCGG--GACGGCU--AGGGCCaGCg -5'
33106 5' -57.9 NC_007497.1 + 21251 0.68 0.427513
Target:  5'- uGAAg-GCCguaUUGCCGuaucUCCUGGUCGCg -3'
miRNA:   3'- cCUUagCGG---GACGGCu---AGGGCCAGCG- -5'
33106 5' -57.9 NC_007497.1 + 4029 0.68 0.427513
Target:  5'- ----gCGCCgUGCCG-UCUCGGcCGCc -3'
miRNA:   3'- ccuuaGCGGgACGGCuAGGGCCaGCG- -5'
33106 5' -57.9 NC_007497.1 + 32083 0.68 0.418179
Target:  5'- cGGuugCuCCCUcGCgGGUCCCGG-CGCa -3'
miRNA:   3'- -CCuuaGcGGGA-CGgCUAGGGCCaGCG- -5'
33106 5' -57.9 NC_007497.1 + 27037 0.68 0.40897
Target:  5'- aGGAUCGCCgUGaagCGAUcaCCCGG-CGCc -3'
miRNA:   3'- cCUUAGCGGgACg--GCUA--GGGCCaGCG- -5'
33106 5' -57.9 NC_007497.1 + 3441 0.69 0.399888
Target:  5'- uGGAuUUGCCUcgcGCUGAcgaUCCGGUCGCc -3'
miRNA:   3'- -CCUuAGCGGGa--CGGCUa--GGGCCAGCG- -5'
33106 5' -57.9 NC_007497.1 + 36171 0.69 0.390937
Target:  5'- gGGGcgCGUCg-GCCG--CCCGGUCGUg -3'
miRNA:   3'- -CCUuaGCGGgaCGGCuaGGGCCAGCG- -5'
33106 5' -57.9 NC_007497.1 + 7551 0.7 0.332046
Target:  5'- aGGAAUacgaGCugggCCUGCCgGAUCCCGG-CGa -3'
miRNA:   3'- -CCUUAg---CG----GGACGG-CUAGGGCCaGCg -5'
33106 5' -57.9 NC_007497.1 + 9202 0.71 0.273049
Target:  5'- aGGAAUUGCCCggcgugGCCGA-CgCGaUCGCg -3'
miRNA:   3'- -CCUUAGCGGGa-----CGGCUaGgGCcAGCG- -5'
33106 5' -57.9 NC_007497.1 + 34839 0.72 0.259678
Target:  5'- cGAGcUCGCCCUGCgCGG-CCgCGGucUCGCg -3'
miRNA:   3'- cCUU-AGCGGGACG-GCUaGG-GCC--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.