miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33107 3' -53.1 NC_007497.1 + 10324 0.68 0.676962
Target:  5'- gCGAGCccAAUGCGAugcGAUCGGGaUG-GCa -3'
miRNA:   3'- gGCUCG--UUGCGCUu--CUAGUCC-ACgCG- -5'
33107 3' -53.1 NC_007497.1 + 5818 0.68 0.654592
Target:  5'- cCCGAGCGgucgGCGCacuGGA--GGGUGCGg -3'
miRNA:   3'- -GGCUCGU----UGCGcu-UCUagUCCACGCg -5'
33107 3' -53.1 NC_007497.1 + 3690 0.69 0.643369
Target:  5'- aCCG-GCGucacCGCGAagcGGAUCAGcGcgGCGCu -3'
miRNA:   3'- -GGCuCGUu---GCGCU---UCUAGUC-Ca-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 43641 0.69 0.64
Target:  5'- gCUGGGCAggccggcaugauccGCGCGAAGGUguGGga-GCu -3'
miRNA:   3'- -GGCUCGU--------------UGCGCUUCUAguCCacgCG- -5'
33107 3' -53.1 NC_007497.1 + 35484 0.69 0.632136
Target:  5'- gCCGGcauuccGCAGCGCGucGAUCAGGUucuCGa -3'
miRNA:   3'- -GGCU------CGUUGCGCuuCUAGUCCAc--GCg -5'
33107 3' -53.1 NC_007497.1 + 18761 0.69 0.632136
Target:  5'- gCCG-GCGACGCgGAAGAguacgCGGGcGaCGCc -3'
miRNA:   3'- -GGCuCGUUGCG-CUUCUa----GUCCaC-GCG- -5'
33107 3' -53.1 NC_007497.1 + 1129 0.69 0.620902
Target:  5'- --aGGCGAC-CGGAGGcCAGGUGuCGCg -3'
miRNA:   3'- ggcUCGUUGcGCUUCUaGUCCAC-GCG- -5'
33107 3' -53.1 NC_007497.1 + 42088 0.69 0.620902
Target:  5'- cUCGAGUuaucCGCGAAGAcCGGGaucucGCGCc -3'
miRNA:   3'- -GGCUCGuu--GCGCUUCUaGUCCa----CGCG- -5'
33107 3' -53.1 NC_007497.1 + 13389 0.69 0.609678
Target:  5'- aCGcaaGGUAACGaCGGcacacAGAUCAGG-GCGCu -3'
miRNA:   3'- gGC---UCGUUGC-GCU-----UCUAGUCCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 40657 0.69 0.598475
Target:  5'- aCGAGUGcCGCGAGcGGUUuauggcugcGGUGCGCg -3'
miRNA:   3'- gGCUCGUuGCGCUU-CUAGu--------CCACGCG- -5'
33107 3' -53.1 NC_007497.1 + 11443 0.7 0.587302
Target:  5'- aUCGAGCAGCG-GAucGcgCAGcUGCGCg -3'
miRNA:   3'- -GGCUCGUUGCgCUu-CuaGUCcACGCG- -5'
33107 3' -53.1 NC_007497.1 + 8767 0.7 0.586186
Target:  5'- gCGAGCGugcagguaacgguACGCGc-GAUCgAGGcUGCGCg -3'
miRNA:   3'- gGCUCGU-------------UGCGCuuCUAG-UCC-ACGCG- -5'
33107 3' -53.1 NC_007497.1 + 4566 0.7 0.576167
Target:  5'- uCCGAcGCGuugGCGAAGGUCgacaAGGUcaGCGCu -3'
miRNA:   3'- -GGCU-CGUug-CGCUUCUAG----UCCA--CGCG- -5'
33107 3' -53.1 NC_007497.1 + 2685 0.7 0.576167
Target:  5'- aCCGuGCGGCGCGA-GAUCccGGUcuuCGCg -3'
miRNA:   3'- -GGCuCGUUGCGCUuCUAGu-CCAc--GCG- -5'
33107 3' -53.1 NC_007497.1 + 23468 0.7 0.575056
Target:  5'- gUCG-GCGaucucgcGCGCGcuGAUCAGGUGCa- -3'
miRNA:   3'- -GGCuCGU-------UGCGCuuCUAGUCCACGcg -5'
33107 3' -53.1 NC_007497.1 + 5285 0.7 0.569509
Target:  5'- aCGGGCAAcgcccgcuuCGCGAugaaccgcaacacgcAGcGUCAGGUGCGg -3'
miRNA:   3'- gGCUCGUU---------GCGCU---------------UC-UAGUCCACGCg -5'
33107 3' -53.1 NC_007497.1 + 29780 0.7 0.554051
Target:  5'- uUCGGGCGcgaGCGCGAAcuggucGGUCGGaGUcgGCGCg -3'
miRNA:   3'- -GGCUCGU---UGCGCUU------CUAGUC-CA--CGCG- -5'
33107 3' -53.1 NC_007497.1 + 20670 0.71 0.52138
Target:  5'- uUCGgcGGCAAUGCGAGGGguggguugCAGGaacaugGCGCg -3'
miRNA:   3'- -GGC--UCGUUGCGCUUCUa-------GUCCa-----CGCG- -5'
33107 3' -53.1 NC_007497.1 + 41092 0.71 0.510653
Target:  5'- aCCGAGCAGCGCuacgccGAccAUCuGGagGCGCg -3'
miRNA:   3'- -GGCUCGUUGCG------CUucUAGuCCa-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 2493 0.71 0.479056
Target:  5'- uCCGGGCggUGCuucu-UCAGGUGCGa -3'
miRNA:   3'- -GGCUCGuuGCGcuucuAGUCCACGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.