miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33108 3' -53.4 NC_007497.1 + 38311 0.66 0.743648
Target:  5'- gUGuAAGAGCUGCcaaUUCuaAUGCgaaagccgggaacccUCGCCCCa -3'
miRNA:   3'- -ACuUUCUCGACG---AAG--UACG---------------GGUGGGG- -5'
33108 3' -53.4 NC_007497.1 + 33631 0.66 0.728331
Target:  5'- -cAGAGAGCUGCUUCGcGaccuCCAUCUg -3'
miRNA:   3'- acUUUCUCGACGAAGUaCg---GGUGGGg -5'
33108 3' -53.4 NC_007497.1 + 22930 0.66 0.706105
Target:  5'- cGAGucAGGGCcGCUgUCGU-CgCCGCCCCg -3'
miRNA:   3'- aCUU--UCUCGaCGA-AGUAcG-GGUGGGG- -5'
33108 3' -53.4 NC_007497.1 + 29626 0.66 0.706105
Target:  5'- gGcGAGAGCgcgcGCUggaugUAUGCCCugaGCCCUu -3'
miRNA:   3'- aCuUUCUCGa---CGAa----GUACGGG---UGGGG- -5'
33108 3' -53.4 NC_007497.1 + 24001 0.67 0.694868
Target:  5'- -aGAAGGGCUGCcgCA-GCa-GCCCCa -3'
miRNA:   3'- acUUUCUCGACGaaGUaCGggUGGGG- -5'
33108 3' -53.4 NC_007497.1 + 21169 0.67 0.649388
Target:  5'- gGAAAGAGCgucguacgGCgccugUCGUGCCCgaugaacaGCUUCa -3'
miRNA:   3'- aCUUUCUCGa-------CGa----AGUACGGG--------UGGGG- -5'
33108 3' -53.4 NC_007497.1 + 41589 0.68 0.626498
Target:  5'- aGAAAaucgcGAGCUGUUcgAUGCCgCuGCCCCa -3'
miRNA:   3'- aCUUU-----CUCGACGAagUACGG-G-UGGGG- -5'
33108 3' -53.4 NC_007497.1 + 15073 0.68 0.615055
Target:  5'- -cGGAGGGCcGCg--AUGCCCACCUg -3'
miRNA:   3'- acUUUCUCGaCGaagUACGGGUGGGg -5'
33108 3' -53.4 NC_007497.1 + 24495 0.68 0.603628
Target:  5'- ----cGAGCUGCaugUCGUGCUCggucGCCCa -3'
miRNA:   3'- acuuuCUCGACGa--AGUACGGG----UGGGg -5'
33108 3' -53.4 NC_007497.1 + 40274 0.68 0.592228
Target:  5'- ----cGAGCUGCUUCGUGUguuCgGCCUUg -3'
miRNA:   3'- acuuuCUCGACGAAGUACG---GgUGGGG- -5'
33108 3' -53.4 NC_007497.1 + 954 0.7 0.503089
Target:  5'- ----cGAGCUGUUUCAUGUCCAagaucacaUCCg -3'
miRNA:   3'- acuuuCUCGACGAAGUACGGGUg-------GGG- -5'
33108 3' -53.4 NC_007497.1 + 21632 0.71 0.420283
Target:  5'- cGGGAGAGCUggcggaauacGCUgacCGUGCCCGCaucgCCg -3'
miRNA:   3'- aCUUUCUCGA----------CGAa--GUACGGGUGg---GG- -5'
33108 3' -53.4 NC_007497.1 + 29465 0.73 0.35499
Target:  5'- uUGAGAGAGgUGCgcaUCAUGCCUcCUUCg -3'
miRNA:   3'- -ACUUUCUCgACGa--AGUACGGGuGGGG- -5'
33108 3' -53.4 NC_007497.1 + 8390 1.13 0.000512
Target:  5'- uUGAAAGAGCUGCUUCAUGCCCACCCCa -3'
miRNA:   3'- -ACUUUCUCGACGAAGUACGGGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.