miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33109 3' -58.6 NC_007497.1 + 44510 0.66 0.485016
Target:  5'- gUCGCCCGCUgaaguggugCUCGCg---UGUGCGGc -3'
miRNA:   3'- gGGCGGGCGA---------GAGCGaaguGCACGUC- -5'
33109 3' -58.6 NC_007497.1 + 23177 0.67 0.445476
Target:  5'- uCCCGCgCGCUCgucaaCGCggccgagCACGUcggcaaGCAGa -3'
miRNA:   3'- -GGGCGgGCGAGa----GCGaa-----GUGCA------CGUC- -5'
33109 3' -58.6 NC_007497.1 + 13621 0.67 0.435874
Target:  5'- gCCGCCCGacgUUCGCggacaACGUGCc- -3'
miRNA:   3'- gGGCGGGCga-GAGCGaag--UGCACGuc -5'
33109 3' -58.6 NC_007497.1 + 43609 0.67 0.435874
Target:  5'- gCCGgCgGCUCgUCGCUUUGCGuUGuCAGg -3'
miRNA:   3'- gGGCgGgCGAG-AGCGAAGUGC-AC-GUC- -5'
33109 3' -58.6 NC_007497.1 + 17736 0.67 0.433017
Target:  5'- -gCGCCCGCaguggcgccgggugaUCGCUUCACG-GCGa -3'
miRNA:   3'- ggGCGGGCGag-------------AGCGAAGUGCaCGUc -5'
33109 3' -58.6 NC_007497.1 + 39223 0.67 0.426393
Target:  5'- gCCG-CCGC-CgacgCGCUUCGuCGUGUAGa -3'
miRNA:   3'- gGGCgGGCGaGa---GCGAAGU-GCACGUC- -5'
33109 3' -58.6 NC_007497.1 + 8800 0.67 0.417035
Target:  5'- gCUGCgCGCgggUCGCUUCGCGgauacGCGGa -3'
miRNA:   3'- gGGCGgGCGag-AGCGAAGUGCa----CGUC- -5'
33109 3' -58.6 NC_007497.1 + 27418 0.67 0.407804
Target:  5'- uUCGCCCGCUCaUCGCcccgCACuGcUGCAu -3'
miRNA:   3'- gGGCGGGCGAG-AGCGaa--GUG-C-ACGUc -5'
33109 3' -58.6 NC_007497.1 + 13285 0.69 0.322868
Target:  5'- aCCGUCaCGCUCgaugCGCUUCgcaaagcuggcGCGUGCu- -3'
miRNA:   3'- gGGCGG-GCGAGa---GCGAAG-----------UGCACGuc -5'
33109 3' -58.6 NC_007497.1 + 13045 0.7 0.264945
Target:  5'- aCCGUCaCGCUCgcugCGCUUCgcaaagcuggcGCGUGCGc -3'
miRNA:   3'- gGGCGG-GCGAGa---GCGAAG-----------UGCACGUc -5'
33109 3' -58.6 NC_007497.1 + 40063 0.73 0.179307
Target:  5'- gCgGCCUGCacgUCgccgCGCUUCACGUGCGc -3'
miRNA:   3'- gGgCGGGCG---AGa---GCGAAGUGCACGUc -5'
33109 3' -58.6 NC_007497.1 + 10223 0.74 0.156729
Target:  5'- gCCGCCCGCgcaggCUCGC-UCAUGcGCAc -3'
miRNA:   3'- gGGCGGGCGa----GAGCGaAGUGCaCGUc -5'
33109 3' -58.6 NC_007497.1 + 19516 0.74 0.152533
Target:  5'- gCCGUCUGCUcCUCGaugcgaaaUCGCGUGCAGg -3'
miRNA:   3'- gGGCGGGCGA-GAGCga------AGUGCACGUC- -5'
33109 3' -58.6 NC_007497.1 + 8639 0.99 0.002212
Target:  5'- cCCCGCCCGCUUcCGCUUCACGUGCAGa -3'
miRNA:   3'- -GGGCGGGCGAGaGCGAAGUGCACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.