miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33110 3' -61 NC_007497.1 + 19154 0.66 0.389987
Target:  5'- aAUCGCaaguguuGGUgUCGGCC-CAGCGGUu -3'
miRNA:   3'- gUAGCGg------CCAgGGCCGGaGUUGCCGu -5'
33110 3' -61 NC_007497.1 + 36918 0.66 0.389987
Target:  5'- -cUCGCCGaGUgCCGGCUgagaAGCGGg- -3'
miRNA:   3'- guAGCGGC-CAgGGCCGGag--UUGCCgu -5'
33110 3' -61 NC_007497.1 + 20857 0.66 0.384723
Target:  5'- ---gGCCGGaCCCgaucgggaucaucacGGCCUgCAAUGGCGa -3'
miRNA:   3'- guagCGGCCaGGG---------------CCGGA-GUUGCCGU- -5'
33110 3' -61 NC_007497.1 + 36597 0.66 0.381241
Target:  5'- --gUGCCGG-CCCGuacGCCUCGGCgaccgcuugGGCAu -3'
miRNA:   3'- guaGCGGCCaGGGC---CGGAGUUG---------CCGU- -5'
33110 3' -61 NC_007497.1 + 44057 0.66 0.381241
Target:  5'- -cUUGCCGGUUUCGGCaUCGuaGGCAc -3'
miRNA:   3'- guAGCGGCCAGGGCCGgAGUugCCGU- -5'
33110 3' -61 NC_007497.1 + 14451 0.66 0.372627
Target:  5'- ---gGcCCGGcauUCCCGGCCaCAugGGCc -3'
miRNA:   3'- guagC-GGCC---AGGGCCGGaGUugCCGu -5'
33110 3' -61 NC_007497.1 + 23654 0.66 0.372627
Target:  5'- ---gGCCGG-CCguuguCGGCCUCGuugagcgcACGGCAc -3'
miRNA:   3'- guagCGGCCaGG-----GCCGGAGU--------UGCCGU- -5'
33110 3' -61 NC_007497.1 + 3671 0.66 0.3558
Target:  5'- -uUCGCCGGccugcUUCCGcGCCUCcagaugguCGGCGu -3'
miRNA:   3'- guAGCGGCC-----AGGGC-CGGAGuu------GCCGU- -5'
33110 3' -61 NC_007497.1 + 28189 0.66 0.3558
Target:  5'- cCAgugCGUCGGcUCCCggaGGCCcgaCAGCGGCc -3'
miRNA:   3'- -GUa--GCGGCC-AGGG---CCGGa--GUUGCCGu -5'
33110 3' -61 NC_007497.1 + 14764 0.66 0.354973
Target:  5'- --aCGCCGGUucggcgugaauaaCCCGcuGCCUUAcgGCGGCu -3'
miRNA:   3'- guaGCGGCCA-------------GGGC--CGGAGU--UGCCGu -5'
33110 3' -61 NC_007497.1 + 42470 0.67 0.323777
Target:  5'- aCGUCGUCGGUgUCgaGGCCUgaaaUGACGGCu -3'
miRNA:   3'- -GUAGCGGCCAgGG--CCGGA----GUUGCCGu -5'
33110 3' -61 NC_007497.1 + 22062 0.67 0.30859
Target:  5'- aCAUCGCUaucuacCCCGGCgugaUCAACGGCu -3'
miRNA:   3'- -GUAGCGGcca---GGGCCGg---AGUUGCCGu -5'
33110 3' -61 NC_007497.1 + 10173 0.68 0.286839
Target:  5'- --cCGCCGG-CuuGGCCgcagCAACGGa- -3'
miRNA:   3'- guaGCGGCCaGggCCGGa---GUUGCCgu -5'
33110 3' -61 NC_007497.1 + 31976 0.68 0.26565
Target:  5'- cCAUCGCCGaaCCCGGCCUUGcgcacacGCaGCGu -3'
miRNA:   3'- -GUAGCGGCcaGGGCCGGAGU-------UGcCGU- -5'
33110 3' -61 NC_007497.1 + 33320 0.69 0.228847
Target:  5'- -cUUGUCGGUCgCCaccGCCUCGACGcGCAg -3'
miRNA:   3'- guAGCGGCCAG-GGc--CGGAGUUGC-CGU- -5'
33110 3' -61 NC_007497.1 + 18627 0.7 0.211841
Target:  5'- --cCGaCGGUCCCGGCgUgCAGgGGCAg -3'
miRNA:   3'- guaGCgGCCAGGGCCGgA-GUUgCCGU- -5'
33110 3' -61 NC_007497.1 + 41596 0.7 0.195934
Target:  5'- uUAUCGCggagacCGGcCCgGGCCUCGACaGCAu -3'
miRNA:   3'- -GUAGCG------GCCaGGgCCGGAGUUGcCGU- -5'
33110 3' -61 NC_007497.1 + 23226 0.72 0.142359
Target:  5'- gCGUCGCCGGcugCCgGGCUUC--CGGCGg -3'
miRNA:   3'- -GUAGCGGCCa--GGgCCGGAGuuGCCGU- -5'
33110 3' -61 NC_007497.1 + 8809 1.07 0.000313
Target:  5'- uCAUCGCCGGUCCCGGCCUCAACGGCAc -3'
miRNA:   3'- -GUAGCGGCCAGGGCCGGAGUUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.