miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33110 5' -52.4 NC_007497.1 + 6260 0.66 0.755826
Target:  5'- ----aUGCCGAGcCGUGgcGCCAGCGa -3'
miRNA:   3'- agaucACGGCUCaGUAUa-CGGUCGUg -5'
33110 5' -52.4 NC_007497.1 + 35150 0.67 0.733901
Target:  5'- -----aGCCGAcGUCGcg-GCCGGCGCg -3'
miRNA:   3'- agaucaCGGCU-CAGUauaCGGUCGUG- -5'
33110 5' -52.4 NC_007497.1 + 27371 0.7 0.562116
Target:  5'- aCUGGUucGCCGGGUCGUuauaGCUgacgAGCGCg -3'
miRNA:   3'- aGAUCA--CGGCUCAGUAua--CGG----UCGUG- -5'
33110 5' -52.4 NC_007497.1 + 43636 0.71 0.452763
Target:  5'- -aUGGUGCUGGG-CAg--GCCGGCAUg -3'
miRNA:   3'- agAUCACGGCUCaGUauaCGGUCGUG- -5'
33110 5' -52.4 NC_007497.1 + 8190 0.73 0.36504
Target:  5'- --cGGUcGCCGAGgCGUAcggGCCGGCACa -3'
miRNA:   3'- agaUCA-CGGCUCaGUAUa--CGGUCGUG- -5'
33110 5' -52.4 NC_007497.1 + 8844 1.11 0.000866
Target:  5'- cUCUAGUGCCGAGUCAUAUGCCAGCACg -3'
miRNA:   3'- -AGAUCACGGCUCAGUAUACGGUCGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.