Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33110 | 5' | -52.4 | NC_007497.1 | + | 6260 | 0.66 | 0.755826 |
Target: 5'- ----aUGCCGAGcCGUGgcGCCAGCGa -3' miRNA: 3'- agaucACGGCUCaGUAUa-CGGUCGUg -5' |
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33110 | 5' | -52.4 | NC_007497.1 | + | 35150 | 0.67 | 0.733901 |
Target: 5'- -----aGCCGAcGUCGcg-GCCGGCGCg -3' miRNA: 3'- agaucaCGGCU-CAGUauaCGGUCGUG- -5' |
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33110 | 5' | -52.4 | NC_007497.1 | + | 27371 | 0.7 | 0.562116 |
Target: 5'- aCUGGUucGCCGGGUCGUuauaGCUgacgAGCGCg -3' miRNA: 3'- aGAUCA--CGGCUCAGUAua--CGG----UCGUG- -5' |
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33110 | 5' | -52.4 | NC_007497.1 | + | 43636 | 0.71 | 0.452763 |
Target: 5'- -aUGGUGCUGGG-CAg--GCCGGCAUg -3' miRNA: 3'- agAUCACGGCUCaGUauaCGGUCGUG- -5' |
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33110 | 5' | -52.4 | NC_007497.1 | + | 8190 | 0.73 | 0.36504 |
Target: 5'- --cGGUcGCCGAGgCGUAcggGCCGGCACa -3' miRNA: 3'- agaUCA-CGGCUCaGUAUa--CGGUCGUG- -5' |
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33110 | 5' | -52.4 | NC_007497.1 | + | 8844 | 1.11 | 0.000866 |
Target: 5'- cUCUAGUGCCGAGUCAUAUGCCAGCACg -3' miRNA: 3'- -AGAUCACGGCUCAGUAUACGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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