miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33111 5' -61.4 NC_007497.1 + 17835 0.66 0.359329
Target:  5'- -aAGCUGGuguAUCaCCCCGGCCUGaGCUu -3'
miRNA:   3'- gaUCGGUC---UAG-GGGGCCGGACgUGGc -5'
33111 5' -61.4 NC_007497.1 + 39443 0.66 0.338071
Target:  5'- --uGCCAGAgauaguUCCCuuGGCCguccuucagcuuccGCACCu -3'
miRNA:   3'- gauCGGUCU------AGGGggCCGGa-------------CGUGGc -5'
33111 5' -61.4 NC_007497.1 + 23260 0.66 0.334883
Target:  5'- -cAGCCGGuAUCCCaUgGGCgCUGCuuGCCGc -3'
miRNA:   3'- gaUCGGUC-UAGGG-GgCCG-GACG--UGGC- -5'
33111 5' -61.4 NC_007497.1 + 37834 0.66 0.334883
Target:  5'- --cGCCuGGUCCUguggcugauCCGGCCgGCACuCGa -3'
miRNA:   3'- gauCGGuCUAGGG---------GGCCGGaCGUG-GC- -5'
33111 5' -61.4 NC_007497.1 + 42515 0.67 0.311677
Target:  5'- -gAGCUuGggCCUCCGGCUgcuuuucGCGCCGg -3'
miRNA:   3'- gaUCGGuCuaGGGGGCCGGa------CGUGGC- -5'
33111 5' -61.4 NC_007497.1 + 1146 0.67 0.311677
Target:  5'- --cGCgCGGAUCaUgCCGGCCUGC-CCa -3'
miRNA:   3'- gauCG-GUCUAG-GgGGCCGGACGuGGc -5'
33111 5' -61.4 NC_007497.1 + 466 0.67 0.304217
Target:  5'- -aAGCCGGuuUgCUCCGGCg-GCACCGc -3'
miRNA:   3'- gaUCGGUCu-AgGGGGCCGgaCGUGGC- -5'
33111 5' -61.4 NC_007497.1 + 14308 0.67 0.282665
Target:  5'- --cGCCAGcgagcggCCCgCGGCuCUGCAUCGc -3'
miRNA:   3'- gauCGGUCua-----GGGgGCCG-GACGUGGC- -5'
33111 5' -61.4 NC_007497.1 + 35069 0.69 0.213942
Target:  5'- --uGCCGGcaagCUCGGCCUGCGCCGc -3'
miRNA:   3'- gauCGGUCuaggGGGCCGGACGUGGC- -5'
33111 5' -61.4 NC_007497.1 + 1840 0.7 0.187742
Target:  5'- -aGGCCGGcGUCgaCCCGGCCgGUAUCGg -3'
miRNA:   3'- gaUCGGUC-UAGg-GGGCCGGaCGUGGC- -5'
33111 5' -61.4 NC_007497.1 + 4213 0.7 0.182853
Target:  5'- --cGCCGGGUaUUCCCGGUCcaUGCGCCGu -3'
miRNA:   3'- gauCGGUCUA-GGGGGCCGG--ACGUGGC- -5'
33111 5' -61.4 NC_007497.1 + 43053 0.73 0.11053
Target:  5'- --cGUCAGAUCCCCC-GCCUucucgaaaucgugaaGCGCCGg -3'
miRNA:   3'- gauCGGUCUAGGGGGcCGGA---------------CGUGGC- -5'
33111 5' -61.4 NC_007497.1 + 9017 1.07 0.000247
Target:  5'- cCUAGCCAGAUCCCCCGGCCUGCACCGc -3'
miRNA:   3'- -GAUCGGUCUAGGGGGCCGGACGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.