miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33112 3' -56.2 NC_007497.1 + 28142 0.66 0.545037
Target:  5'- cGGCGUAGCGCau-GCGCga-GUUGCCa -3'
miRNA:   3'- -UUGCGUCGUGgcuUGCGacgCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 8975 0.66 0.545037
Target:  5'- cAACGCGGaGCCGcucGACGCgacgGCGgaGCUg -3'
miRNA:   3'- -UUGCGUCgUGGC---UUGCGa---CGCgaUGG- -5'
33112 3' -56.2 NC_007497.1 + 4651 0.66 0.545037
Target:  5'- uGACGCuGUgucgACCGAGCGCgucCGUUACg -3'
miRNA:   3'- -UUGCGuCG----UGGCUUGCGac-GCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 20308 0.67 0.534139
Target:  5'- cAUGCAGC-UCGAcgcuACGCUGaCGUUACg -3'
miRNA:   3'- uUGCGUCGuGGCU----UGCGAC-GCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 15816 0.67 0.534139
Target:  5'- cAGCGCAGCgGCCuucAUGCUacccaaCGCUGCCa -3'
miRNA:   3'- -UUGCGUCG-UGGcu-UGCGAc-----GCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 5810 0.67 0.523318
Target:  5'- aGACGguGC-CCGAGCGgucgGCGC-ACUg -3'
miRNA:   3'- -UUGCguCGuGGCUUGCga--CGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 791 0.67 0.523318
Target:  5'- cAUGCGGCAUCGAucACGCcgacgGCGC--CCg -3'
miRNA:   3'- uUGCGUCGUGGCU--UGCGa----CGCGauGG- -5'
33112 3' -56.2 NC_007497.1 + 9721 0.67 0.520088
Target:  5'- cGGCGCAG-GCCGAgcuugccggcaugcGCGCgaUGCGCgaaaGCCu -3'
miRNA:   3'- -UUGCGUCgUGGCU--------------UGCG--ACGCGa---UGG- -5'
33112 3' -56.2 NC_007497.1 + 18886 0.67 0.512583
Target:  5'- gAAUuCGGCgACCGcAACGCUGUccGCUGCUg -3'
miRNA:   3'- -UUGcGUCG-UGGC-UUGCGACG--CGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 39844 0.67 0.512583
Target:  5'- gAACGUAGccgcguugguCugCGGACGCUG-GCUugCu -3'
miRNA:   3'- -UUGCGUC----------GugGCUUGCGACgCGAugG- -5'
33112 3' -56.2 NC_007497.1 + 17867 0.67 0.50194
Target:  5'- cGGCGCGGUAUgGAugcuggaaaGCGaUGCGCUcACCg -3'
miRNA:   3'- -UUGCGUCGUGgCU---------UGCgACGCGA-UGG- -5'
33112 3' -56.2 NC_007497.1 + 11271 0.67 0.50194
Target:  5'- uAACGUuGCA-CGGGCGC-GUGCUGCUg -3'
miRNA:   3'- -UUGCGuCGUgGCUUGCGaCGCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 35364 0.67 0.491395
Target:  5'- cGCGCuGGCGCCGGuCGCUucguuCGCUcgACCa -3'
miRNA:   3'- uUGCG-UCGUGGCUuGCGAc----GCGA--UGG- -5'
33112 3' -56.2 NC_007497.1 + 1807 0.67 0.491395
Target:  5'- -uCGCucGCAUCGAgcGCGCUGgGCUucuauacaagGCCg -3'
miRNA:   3'- uuGCGu-CGUGGCU--UGCGACgCGA----------UGG- -5'
33112 3' -56.2 NC_007497.1 + 35849 0.67 0.491395
Target:  5'- uGCGCAGCACgu--CGUccUGCGCgACCg -3'
miRNA:   3'- uUGCGUCGUGgcuuGCG--ACGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 29310 0.67 0.485117
Target:  5'- aGACGCAGCcgaucgcgacuccguACgCGAAUGCgacaGCGCUuCCc -3'
miRNA:   3'- -UUGCGUCG---------------UG-GCUUGCGa---CGCGAuGG- -5'
33112 3' -56.2 NC_007497.1 + 38664 0.68 0.460402
Target:  5'- aGGCGUgGGCGCgCGAGCGCgguuacGCGCUugUc -3'
miRNA:   3'- -UUGCG-UCGUG-GCUUGCGa-----CGCGAugG- -5'
33112 3' -56.2 NC_007497.1 + 17737 0.68 0.454328
Target:  5'- cGAUGCAGUACCGAAuCGUUgggaaGCGCgaauucggcgagacgUGCCu -3'
miRNA:   3'- -UUGCGUCGUGGCUU-GCGA-----CGCG---------------AUGG- -5'
33112 3' -56.2 NC_007497.1 + 37713 0.68 0.450303
Target:  5'- uGGCGCuguaccAGCACUGAGCuaUGCGCcguCCc -3'
miRNA:   3'- -UUGCG------UCGUGGCUUGcgACGCGau-GG- -5'
33112 3' -56.2 NC_007497.1 + 17679 0.68 0.450303
Target:  5'- cGGCGCAucgGCgGCCGuaucCGCUcCGCUGCCg -3'
miRNA:   3'- -UUGCGU---CG-UGGCuu--GCGAcGCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.