Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33113 | 3' | -53.3 | NC_007497.1 | + | 11037 | 1.05 | 0.002054 |
Target: 5'- aAGCAGCACGACGAGAUCACCGGAUUUc -3' miRNA: 3'- -UCGUCGUGCUGCUCUAGUGGCCUAAA- -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 37205 | 0.66 | 0.759104 |
Target: 5'- gAGUAGUuuccguCGAcCGAGAauUCGCCGGGa-- -3' miRNA: 3'- -UCGUCGu-----GCU-GCUCU--AGUGGCCUaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 11683 | 0.66 | 0.737482 |
Target: 5'- -cCGGCACGGcCGGGAguaGCCGGGc-- -3' miRNA: 3'- ucGUCGUGCU-GCUCUag-UGGCCUaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 14693 | 0.66 | 0.704221 |
Target: 5'- aGGUgaAGCAUGaACGAGAUCACCa----- -3' miRNA: 3'- -UCG--UCGUGC-UGCUCUAGUGGccuaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 7979 | 0.69 | 0.533974 |
Target: 5'- cGCAGCACGcAUccauGUCACCGGAUUc -3' miRNA: 3'- uCGUCGUGC-UGcuc-UAGUGGCCUAAa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 1091 | 0.7 | 0.50113 |
Target: 5'- gGGCAGCGCGcGCGAuGAUCACUGc---- -3' miRNA: 3'- -UCGUCGUGC-UGCU-CUAGUGGCcuaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 21484 | 0.7 | 0.478677 |
Target: 5'- gAGCAGCGCcGCGAGAUCgaggcucucgaacACCaGAUUg -3' miRNA: 3'- -UCGUCGUGcUGCUCUAG-------------UGGcCUAAa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 217 | 0.72 | 0.408698 |
Target: 5'- cGguGCGCGACGAuguGAUCGCCGa---- -3' miRNA: 3'- uCguCGUGCUGCU---CUAGUGGCcuaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 26758 | 0.72 | 0.399094 |
Target: 5'- uGGCGGCACGACc--GUCACCGGc--- -3' miRNA: 3'- -UCGUCGUGCUGcucUAGUGGCCuaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 21284 | 0.66 | 0.715401 |
Target: 5'- uGCugGGCGCGGCGGcGggCGCCGGcgUc -3' miRNA: 3'- uCG--UCGUGCUGCU-CuaGUGGCCuaAa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 39388 | 0.66 | 0.714287 |
Target: 5'- aAGCGGgguggauuacggaCACgGGCGAGcgCGCCGGAc-- -3' miRNA: 3'- -UCGUC-------------GUG-CUGCUCuaGUGGCCUaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 40417 | 0.67 | 0.692963 |
Target: 5'- cGCGGCuacaagauGCGuaGCGAGA-CGCCGGAa-- -3' miRNA: 3'- uCGUCG--------UGC--UGCUCUaGUGGCCUaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 407 | 0.67 | 0.658861 |
Target: 5'- aAGCGGCugGGCGAGGgcggCAagaaGGAa-- -3' miRNA: 3'- -UCGUCGugCUGCUCUa---GUgg--CCUaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 18450 | 0.69 | 0.521836 |
Target: 5'- cGCAGCGCacCGAGAUCugguacaGCCGGAc-- -3' miRNA: 3'- uCGUCGUGcuGCUCUAG-------UGGCCUaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 29615 | 0.7 | 0.490378 |
Target: 5'- gGGUcguGUACGGCGAGAgcgcgCGCUGGAUg- -3' miRNA: 3'- -UCGu--CGUGCUGCUCUa----GUGGCCUAaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 11864 | 0.7 | 0.469206 |
Target: 5'- aAGaCGGCACGuuGGGcUCGCCGGAa-- -3' miRNA: 3'- -UC-GUCGUGCugCUCuAGUGGCCUaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 21323 | 0.72 | 0.408698 |
Target: 5'- -uCAGCGCGcGCGAGAUCGCCGa---- -3' miRNA: 3'- ucGUCGUGC-UGCUCUAGUGGCcuaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 16248 | 0.75 | 0.273294 |
Target: 5'- cGGCGGCG-GugGAGAgUCGCCGGAc-- -3' miRNA: 3'- -UCGUCGUgCugCUCU-AGUGGCCUaaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 4904 | 0.76 | 0.220288 |
Target: 5'- gGGCGGCACGACGAGcg-GCUGGGUc- -3' miRNA: 3'- -UCGUCGUGCUGCUCuagUGGCCUAaa -5' |
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33113 | 3' | -53.3 | NC_007497.1 | + | 38675 | 0.66 | 0.726493 |
Target: 5'- cGCgAGCGCGGuuacgcgcuuguCGAGAuuccgUCGCCGGAg-- -3' miRNA: 3'- uCG-UCGUGCU------------GCUCU-----AGUGGCCUaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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