miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33114 5' -49 NC_007497.1 + 4568 0.66 0.940384
Target:  5'- cGACGCGUUGGCGAaggucgacaaggUCAGC-GCUGa- -3'
miRNA:   3'- cUUGCGUAGCUGCU------------AGUUGaCGAUca -5'
33114 5' -49 NC_007497.1 + 4984 0.66 0.931393
Target:  5'- --uCGCAUCGGCGAaaucuaugcgaaccCGGCUGCUAc- -3'
miRNA:   3'- cuuGCGUAGCUGCUa-------------GUUGACGAUca -5'
33114 5' -49 NC_007497.1 + 43356 0.66 0.92902
Target:  5'- --gUGCuUCG-CGAUgAACUGCUGGa -3'
miRNA:   3'- cuuGCGuAGCuGCUAgUUGACGAUCa -5'
33114 5' -49 NC_007497.1 + 15283 0.67 0.916397
Target:  5'- -cGCGCAUCcaGugGAUCGACUGg---- -3'
miRNA:   3'- cuUGCGUAG--CugCUAGUUGACgauca -5'
33114 5' -49 NC_007497.1 + 25975 0.67 0.915733
Target:  5'- cGAugGCGUCGGCGGcuuccaccacaaaUCcACUGCcGGc -3'
miRNA:   3'- -CUugCGUAGCUGCU-------------AGuUGACGaUCa -5'
33114 5' -49 NC_007497.1 + 1094 0.67 0.909615
Target:  5'- cAGCGCGcgCGAUGAUC-ACUGCacGGUg -3'
miRNA:   3'- cUUGCGUa-GCUGCUAGuUGACGa-UCA- -5'
33114 5' -49 NC_007497.1 + 4276 0.67 0.895121
Target:  5'- --gUGCGUCGcCGAUCAGCacgggcgGCUGGc -3'
miRNA:   3'- cuuGCGUAGCuGCUAGUUGa------CGAUCa -5'
33114 5' -49 NC_007497.1 + 13904 0.67 0.895121
Target:  5'- -uACGuCGUCGGCG-UCGAUUGUUGGc -3'
miRNA:   3'- cuUGC-GUAGCUGCuAGUUGACGAUCa -5'
33114 5' -49 NC_007497.1 + 39772 0.68 0.879418
Target:  5'- -cGCGuCGUCGAgGAUCuGCUGCgUAGc -3'
miRNA:   3'- cuUGC-GUAGCUgCUAGuUGACG-AUCa -5'
33114 5' -49 NC_007497.1 + 17679 0.68 0.871128
Target:  5'- cGGCGCAUCGGCGGccguauccgcUCcGCUGCcGGc -3'
miRNA:   3'- cUUGCGUAGCUGCU----------AGuUGACGaUCa -5'
33114 5' -49 NC_007497.1 + 30541 0.68 0.853709
Target:  5'- -cACG-AUCGACG-UCGACUGCaGGUg -3'
miRNA:   3'- cuUGCgUAGCUGCuAGUUGACGaUCA- -5'
33114 5' -49 NC_007497.1 + 33334 0.68 0.853709
Target:  5'- --cCGCcUCGACGcgCAGCUGCg--- -3'
miRNA:   3'- cuuGCGuAGCUGCuaGUUGACGauca -5'
33114 5' -49 NC_007497.1 + 23108 0.68 0.844598
Target:  5'- uAGCGCGUCGuagucGCGcUCGcACUGCUGGc -3'
miRNA:   3'- cUUGCGUAGC-----UGCuAGU-UGACGAUCa -5'
33114 5' -49 NC_007497.1 + 10749 0.68 0.844598
Target:  5'- aGGACGCAUCGGCaAUCGAUacgGCaGGg -3'
miRNA:   3'- -CUUGCGUAGCUGcUAGUUGa--CGaUCa -5'
33114 5' -49 NC_007497.1 + 36171 0.69 0.835233
Target:  5'- gGGGCGCGUCGGCcgcccGGUCGugugGCUGCgGGg -3'
miRNA:   3'- -CUUGCGUAGCUG-----CUAGU----UGACGaUCa -5'
33114 5' -49 NC_007497.1 + 6449 0.71 0.718906
Target:  5'- -uGCGCAUucgcuaCGGCGAUCAACUGUa--- -3'
miRNA:   3'- cuUGCGUA------GCUGCUAGUUGACGauca -5'
33114 5' -49 NC_007497.1 + 27994 0.72 0.684351
Target:  5'- --cCGUGUCGGCGAUCAGCgaGCUGu- -3'
miRNA:   3'- cuuGCGUAGCUGCUAGUUGa-CGAUca -5'
33114 5' -49 NC_007497.1 + 39964 0.72 0.671533
Target:  5'- uGGCGCAUCGGCGAaaUCAGaacgaguUUGUUGGUg -3'
miRNA:   3'- cUUGCGUAGCUGCU--AGUU-------GACGAUCA- -5'
33114 5' -49 NC_007497.1 + 39300 0.72 0.661006
Target:  5'- cGAUGCgGUCGAUGAUCAGauacguCUGCUGGa -3'
miRNA:   3'- cUUGCG-UAGCUGCUAGUU------GACGAUCa -5'
33114 5' -49 NC_007497.1 + 17099 0.72 0.637539
Target:  5'- cGAUGCAUCGAUGAUCGACaaguggggGCUGu- -3'
miRNA:   3'- cUUGCGUAGCUGCUAGUUGa-------CGAUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.