Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33115 | 3' | -61.3 | NC_007497.1 | + | 795 | 0.66 | 0.370998 |
Target: 5'- cGgCAUCGAucacgccGACGGCGCCCGUCu-- -3' miRNA: 3'- aCgGUGGCUc------CUGCCGUGGGCGGuuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 2445 | 0.66 | 0.354211 |
Target: 5'- cGCCGCUGGGcGuucgcGCGGCgACgCGCCAu- -3' miRNA: 3'- aCGGUGGCUC-C-----UGCCG-UGgGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 3136 | 0.67 | 0.307129 |
Target: 5'- cUGUCuCgCGcucGGACGGCGCCgGCCAGc -3' miRNA: 3'- -ACGGuG-GCu--CCUGCCGUGGgCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 4188 | 0.67 | 0.314632 |
Target: 5'- cGCuCAUCGAagcgucGAUGGCGCgCGCCGGGu -3' miRNA: 3'- aCG-GUGGCUc-----CUGCCGUGgGCGGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 4895 | 0.68 | 0.258434 |
Target: 5'- uUGCCuCCGccGACGGCcgcACCgGCCAGc -3' miRNA: 3'- -ACGGuGGCucCUGCCG---UGGgCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 8613 | 0.7 | 0.194868 |
Target: 5'- aGCCACaCGAccGGGCGGCcgacgcgccccGCCCGCUu-- -3' miRNA: 3'- aCGGUG-GCU--CCUGCCG-----------UGGGCGGuuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 9268 | 0.84 | 0.018412 |
Target: 5'- cGCuCGCCGAGGACGGCAagcucaCCGUCGAGa -3' miRNA: 3'- aCG-GUGGCUCCUGCCGUg-----GGCGGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 9707 | 0.69 | 0.216234 |
Target: 5'- gGCgGCgGAGGucGCGGCGCagGCCGAGc -3' miRNA: 3'- aCGgUGgCUCC--UGCCGUGggCGGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 10200 | 0.66 | 0.370998 |
Target: 5'- gUGCCGCgGucgcgcaaacGGCGGcCGCCCGCgCAGGc -3' miRNA: 3'- -ACGGUGgCuc--------CUGCC-GUGGGCG-GUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 10582 | 0.67 | 0.292535 |
Target: 5'- cGUCACugaCGAGGaucagGCGGCACUCGaCCGAu -3' miRNA: 3'- aCGGUG---GCUCC-----UGCCGUGGGC-GGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 10895 | 0.66 | 0.346021 |
Target: 5'- cGCUACCGccccagcaaGGGGCGGCGaaCGUgGAGc -3' miRNA: 3'- aCGGUGGC---------UCCUGCCGUggGCGgUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 11379 | 0.71 | 0.161907 |
Target: 5'- gGcCCAUCGGacgcgggcGGGCGGCGCCCGuuCCGAGc -3' miRNA: 3'- aC-GGUGGCU--------CCUGCCGUGGGC--GGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 12309 | 1.08 | 0.000245 |
Target: 5'- aUGCCACCGAGGACGGCACCCGCCAAGu -3' miRNA: 3'- -ACGGUGGCUCCUGCCGUGGGCGGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 13614 | 0.67 | 0.307129 |
Target: 5'- gGCCACUGAGGAaGaGCgGgCCGCCGc- -3' miRNA: 3'- aCGGUGGCUCCUgC-CG-UgGGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 13809 | 0.66 | 0.354211 |
Target: 5'- gGCCGCCGcauGGGCcGCACgggaCGCCGcAGg -3' miRNA: 3'- aCGGUGGCu--CCUGcCGUGg---GCGGU-UC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 13842 | 0.67 | 0.299763 |
Target: 5'- gGCCGCCGcAGGG-GGCGCcgcaugggCCGCaCGGGa -3' miRNA: 3'- aCGGUGGC-UCCUgCCGUG--------GGCG-GUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 13887 | 0.66 | 0.330052 |
Target: 5'- gGCCGCCGcagGGGACGccGCAUgggUCGCCGcAGg -3' miRNA: 3'- aCGGUGGC---UCCUGC--CGUG---GGCGGU-UC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 15807 | 0.7 | 0.175371 |
Target: 5'- gGCCGCCGAaaccugagccaGGAcgaucucaCGGCACCCGUaGGGg -3' miRNA: 3'- aCGGUGGCU-----------CCU--------GCCGUGGGCGgUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 16216 | 0.71 | 0.158902 |
Target: 5'- cGCCGCCGAGGcugugugcuucguucGCgGGCGCCCucacuuccacuacGCCGAc -3' miRNA: 3'- aCGGUGGCUCC---------------UG-CCGUGGG-------------CGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 17572 | 0.66 | 0.362537 |
Target: 5'- cGCgCGCCGAGGugACGGaUACCgaGCCGc- -3' miRNA: 3'- aCG-GUGGCUCC--UGCC-GUGGg-CGGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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