miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33115 3' -61.3 NC_007497.1 + 17705 0.67 0.302693
Target:  5'- cGCUGCCGGcgcgguugucguguuGGACaaGGCGCCCGCa--- -3'
miRNA:   3'- aCGGUGGCU---------------CCUG--CCGUGGGCGguuc -5'
33115 3' -61.3 NC_007497.1 + 13842 0.67 0.299763
Target:  5'- gGCCGCCGcAGGG-GGCGCcgcaugggCCGCaCGGGa -3'
miRNA:   3'- aCGGUGGC-UCCUgCCGUG--------GGCG-GUUC- -5'
33115 3' -61.3 NC_007497.1 + 10582 0.67 0.292535
Target:  5'- cGUCACugaCGAGGaucagGCGGCACUCGaCCGAu -3'
miRNA:   3'- aCGGUG---GCUCC-----UGCCGUGGGC-GGUUc -5'
33115 3' -61.3 NC_007497.1 + 18047 0.67 0.285444
Target:  5'- gUGCCGCCaucGGuACaGGCA-CCGCCGAGc -3'
miRNA:   3'- -ACGGUGGcu-CC-UG-CCGUgGGCGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 37767 0.68 0.27167
Target:  5'- gGCCGCCGAacucgcgacGGACacguagccuuuGGCGCCC-CCGAc -3'
miRNA:   3'- aCGGUGGCU---------CCUG-----------CCGUGGGcGGUUc -5'
33115 3' -61.3 NC_007497.1 + 39984 0.68 0.27167
Target:  5'- cGCagaACgGAGGuGCGGCAUgaCGCCGAGc -3'
miRNA:   3'- aCGg--UGgCUCC-UGCCGUGg-GCGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 27465 0.68 0.26965
Target:  5'- cGCCGCCGuguacacguacaccGGaucuGACGGCAugUCCGCCGAu -3'
miRNA:   3'- aCGGUGGC--------------UC----CUGCCGU--GGGCGGUUc -5'
33115 3' -61.3 NC_007497.1 + 39250 0.68 0.264985
Target:  5'- gGCCGgCGaAGGcgguccugAUGGCGCUCGCCGAc -3'
miRNA:   3'- aCGGUgGC-UCC--------UGCCGUGGGCGGUUc -5'
33115 3' -61.3 NC_007497.1 + 4895 0.68 0.258434
Target:  5'- uUGCCuCCGccGACGGCcgcACCgGCCAGc -3'
miRNA:   3'- -ACGGuGGCucCUGCCG---UGGgCGGUUc -5'
33115 3' -61.3 NC_007497.1 + 26745 0.68 0.252017
Target:  5'- gUGCCuguACCGAuGGCGGCACgaCCGUCAc- -3'
miRNA:   3'- -ACGG---UGGCUcCUGCCGUG--GGCGGUuc -5'
33115 3' -61.3 NC_007497.1 + 42554 0.69 0.23355
Target:  5'- cGUgGCCGAGGGCucgaaguaccuGGCGgCCUGCCGu- -3'
miRNA:   3'- aCGgUGGCUCCUG-----------CCGU-GGGCGGUuc -5'
33115 3' -61.3 NC_007497.1 + 40627 0.69 0.23355
Target:  5'- uUGCCGCagcucGGGGCGGCAUgaCCGUCGAc -3'
miRNA:   3'- -ACGGUGgc---UCCUGCCGUG--GGCGGUUc -5'
33115 3' -61.3 NC_007497.1 + 9707 0.69 0.216234
Target:  5'- gGCgGCgGAGGucGCGGCGCagGCCGAGc -3'
miRNA:   3'- aCGgUGgCUCC--UGCCGUGggCGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 8613 0.7 0.194868
Target:  5'- aGCCACaCGAccGGGCGGCcgacgcgccccGCCCGCUu-- -3'
miRNA:   3'- aCGGUG-GCU--CCUGCCG-----------UGGGCGGuuc -5'
33115 3' -61.3 NC_007497.1 + 32488 0.7 0.180076
Target:  5'- uUGCCGCCGGcGGCGGCcGCgaCGCCAu- -3'
miRNA:   3'- -ACGGUGGCUcCUGCCG-UGg-GCGGUuc -5'
33115 3' -61.3 NC_007497.1 + 15807 0.7 0.175371
Target:  5'- gGCCGCCGAaaccugagccaGGAcgaucucaCGGCACCCGUaGGGg -3'
miRNA:   3'- aCGGUGGCU-----------CCU--------GCCGUGGGCGgUUC- -5'
33115 3' -61.3 NC_007497.1 + 17853 0.7 0.174443
Target:  5'- gGCCugagcuucggaaagcCCGAGGAUGGCgacuggaaguuguuGCCCGCCGc- -3'
miRNA:   3'- aCGGu--------------GGCUCCUGCCG--------------UGGGCGGUuc -5'
33115 3' -61.3 NC_007497.1 + 11379 0.71 0.161907
Target:  5'- gGcCCAUCGGacgcgggcGGGCGGCGCCCGuuCCGAGc -3'
miRNA:   3'- aC-GGUGGCU--------CCUGCCGUGGGC--GGUUC- -5'
33115 3' -61.3 NC_007497.1 + 16216 0.71 0.158902
Target:  5'- cGCCGCCGAGGcugugugcuucguucGCgGGCGCCCucacuuccacuacGCCGAc -3'
miRNA:   3'- aCGGUGGCUCC---------------UG-CCGUGGG-------------CGGUUc -5'
33115 3' -61.3 NC_007497.1 + 34492 0.73 0.109759
Target:  5'- cGCCACCGugccgacggucgucAGGAUgccgGGCAgCCCGCCGAc -3'
miRNA:   3'- aCGGUGGC--------------UCCUG----CCGU-GGGCGGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.