Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33115 | 5' | -55.9 | NC_007497.1 | + | 12346 | 1.07 | 0.000836 |
Target: 5'- uUCCCCAUGCCUUCGGCUUCCAUCGAUg -3' miRNA: 3'- -AGGGGUACGGAAGCCGAAGGUAGCUA- -5' |
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33115 | 5' | -55.9 | NC_007497.1 | + | 29752 | 0.78 | 0.109096 |
Target: 5'- cCCCCAUGUCUUCGGCgUCCGcguagucuUCGGg -3' miRNA: 3'- aGGGGUACGGAAGCCGaAGGU--------AGCUa -5' |
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33115 | 5' | -55.9 | NC_007497.1 | + | 33979 | 0.74 | 0.202689 |
Target: 5'- aCCCCGUGCUg-CGGCgUCCAUCGc- -3' miRNA: 3'- aGGGGUACGGaaGCCGaAGGUAGCua -5' |
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33115 | 5' | -55.9 | NC_007497.1 | + | 15234 | 0.66 | 0.592594 |
Target: 5'- cCCCCGcGCCUgUGGCgcaUCCcgCGGa -3' miRNA: 3'- aGGGGUaCGGAaGCCGa--AGGuaGCUa -5' |
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33115 | 5' | -55.9 | NC_007497.1 | + | 25872 | 0.72 | 0.278943 |
Target: 5'- uUCCCCAUaGCCUUCGGCaugagCCuuaucgCGAc -3' miRNA: 3'- -AGGGGUA-CGGAAGCCGaa---GGua----GCUa -5' |
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33115 | 5' | -55.9 | NC_007497.1 | + | 42614 | 0.68 | 0.47337 |
Target: 5'- gCCCgGUGUCUgcCGGCUgaaUCCgAUCGAUg -3' miRNA: 3'- aGGGgUACGGAa-GCCGA---AGG-UAGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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