miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33116 5' -49.9 NC_007497.1 + 38560 0.66 0.910725
Target:  5'- cGCGaUGCUGCGAaacaAGGUcaauccgaacaacgACAcccACAAGCUg -3'
miRNA:   3'- -CGC-ACGAUGCU----UCCGa-------------UGU---UGUUCGA- -5'
33116 5' -49.9 NC_007497.1 + 21848 0.66 0.907955
Target:  5'- ---cGCaUGCGggGGCgGCGACGacAGCg -3'
miRNA:   3'- cgcaCG-AUGCuuCCGaUGUUGU--UCGa -5'
33116 5' -49.9 NC_007497.1 + 9985 0.66 0.900816
Target:  5'- gGCGUcGCUgGCGuuGGCgcaGCAGCGAcGCg -3'
miRNA:   3'- -CGCA-CGA-UGCuuCCGa--UGUUGUU-CGa -5'
33116 5' -49.9 NC_007497.1 + 21121 0.66 0.893372
Target:  5'- cGCGUGCcgUGCGcucaacGAGGCcgACAACGgccGGCc -3'
miRNA:   3'- -CGCACG--AUGC------UUCCGa-UGUUGU---UCGa -5'
33116 5' -49.9 NC_007497.1 + 8770 0.66 0.884839
Target:  5'- aGCGUGCagguaacggUACGcgcgaucGAGGCUGCGcGCGGGUc -3'
miRNA:   3'- -CGCACG---------AUGC-------UUCCGAUGU-UGUUCGa -5'
33116 5' -49.9 NC_007497.1 + 21278 0.67 0.869272
Target:  5'- uCGcGCUGCu-GGGCgcgGCGGCGGGCg -3'
miRNA:   3'- cGCaCGAUGcuUCCGa--UGUUGUUCGa -5'
33116 5' -49.9 NC_007497.1 + 17012 0.67 0.84267
Target:  5'- uGUGUuCUGCGcAGGCUG--GCAAGCa -3'
miRNA:   3'- -CGCAcGAUGCuUCCGAUguUGUUCGa -5'
33116 5' -49.9 NC_007497.1 + 5035 0.67 0.84267
Target:  5'- aCGUGCUcgacgguccACGucGGUUGCucAGCGAGCg -3'
miRNA:   3'- cGCACGA---------UGCuuCCGAUG--UUGUUCGa -5'
33116 5' -49.9 NC_007497.1 + 15762 0.68 0.833289
Target:  5'- --cUGCU-CGAGGcGCgcgACAACGGGCUg -3'
miRNA:   3'- cgcACGAuGCUUC-CGa--UGUUGUUCGA- -5'
33116 5' -49.9 NC_007497.1 + 408 0.68 0.81382
Target:  5'- aGCG-GCUggGCGAGGGCgGCAAgAAGg- -3'
miRNA:   3'- -CGCaCGA--UGCUUCCGaUGUUgUUCga -5'
33116 5' -49.9 NC_007497.1 + 33133 0.68 0.79349
Target:  5'- cCGgGCcGCGcGAGGUUGCGACGAGUUa -3'
miRNA:   3'- cGCaCGaUGC-UUCCGAUGUUGUUCGA- -5'
33116 5' -49.9 NC_007497.1 + 11457 0.68 0.79349
Target:  5'- cGCGcaGCUGCGcgucGAGGCggugGCGaccgACAAGCUg -3'
miRNA:   3'- -CGCa-CGAUGC----UUCCGa---UGU----UGUUCGA- -5'
33116 5' -49.9 NC_007497.1 + 43098 0.68 0.79349
Target:  5'- -aGUGCUgcgcACGAAGGCguacuggaucgACAACAAGa- -3'
miRNA:   3'- cgCACGA----UGCUUCCGa----------UGUUGUUCga -5'
33116 5' -49.9 NC_007497.1 + 36992 0.68 0.79349
Target:  5'- gGCG-GCgcCGGAGGCgg-AACAAGCUu -3'
miRNA:   3'- -CGCaCGauGCUUCCGaugUUGUUCGA- -5'
33116 5' -49.9 NC_007497.1 + 42402 0.7 0.717043
Target:  5'- gGCGcUGUUugGgAGGGCgacgGCAugAAGCg -3'
miRNA:   3'- -CGC-ACGAugC-UUCCGa---UGUugUUCGa -5'
33116 5' -49.9 NC_007497.1 + 39897 0.7 0.694141
Target:  5'- -gGUGCggccgucgGCGGAGGCaACAGCAGGa- -3'
miRNA:   3'- cgCACGa-------UGCUUCCGaUGUUGUUCga -5'
33116 5' -49.9 NC_007497.1 + 438 0.7 0.682581
Target:  5'- aGCGUgacgaaGCUGCGAAGaagGCGGCAAGCc -3'
miRNA:   3'- -CGCA------CGAUGCUUCcgaUGUUGUUCGa -5'
33116 5' -49.9 NC_007497.1 + 44003 0.71 0.635927
Target:  5'- gGCGUGau-CGAugccgcauGGGCUGCAAuCGAGCg -3'
miRNA:   3'- -CGCACgauGCU--------UCCGAUGUU-GUUCGa -5'
33116 5' -49.9 NC_007497.1 + 21182 0.74 0.455183
Target:  5'- cGCGUGCUGCccGGAcuGGUgaaACGGCGAGCUg -3'
miRNA:   3'- -CGCACGAUG--CUU--CCGa--UGUUGUUCGA- -5'
33116 5' -49.9 NC_007497.1 + 23249 0.77 0.313964
Target:  5'- gGCGgaagugGCgggaugGCGGGcGGCUGCGACGAGCUg -3'
miRNA:   3'- -CGCa-----CGa-----UGCUU-CCGAUGUUGUUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.