miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33117 3' -53.3 NC_007497.1 + 25654 0.66 0.774653
Target:  5'- aGUUGAGCGucaauGGCGUCguccagUUGUUCggcACGCa -3'
miRNA:   3'- -CAGCUCGCu----UCGUAG------GACGAGa--UGCG- -5'
33117 3' -53.3 NC_007497.1 + 29390 0.66 0.764187
Target:  5'- -gCGAGCaGGGCGUUgUcGUUUUGCGCa -3'
miRNA:   3'- caGCUCGcUUCGUAGgA-CGAGAUGCG- -5'
33117 3' -53.3 NC_007497.1 + 5373 0.66 0.764187
Target:  5'- cGUCGuacguAGCGggGCAgCCgGCg--ACGCu -3'
miRNA:   3'- -CAGC-----UCGCuuCGUaGGaCGagaUGCG- -5'
33117 3' -53.3 NC_007497.1 + 6090 0.66 0.757837
Target:  5'- uUCGGGCGgcG-AUUCUGaaaaucacggccgaaCUCUACGCa -3'
miRNA:   3'- cAGCUCGCuuCgUAGGAC---------------GAGAUGCG- -5'
33117 3' -53.3 NC_007497.1 + 30680 0.66 0.753576
Target:  5'- uUCGAGC-AGGCcgCCgGCgUCcACGCa -3'
miRNA:   3'- cAGCUCGcUUCGuaGGaCG-AGaUGCG- -5'
33117 3' -53.3 NC_007497.1 + 10535 0.66 0.742832
Target:  5'- cUCGGGUG-GGCAgCCUGUgaucgagcguagUCUugGCa -3'
miRNA:   3'- cAGCUCGCuUCGUaGGACG------------AGAugCG- -5'
33117 3' -53.3 NC_007497.1 + 27755 0.66 0.741751
Target:  5'- cGUUGGcagauGCGgcGCggCCUGCUugccagcCUGCGCa -3'
miRNA:   3'- -CAGCU-----CGCuuCGuaGGACGA-------GAUGCG- -5'
33117 3' -53.3 NC_007497.1 + 9972 0.66 0.720999
Target:  5'- cUCGAGCguccGAGGCGUCgCUGgCguugGCGCa -3'
miRNA:   3'- cAGCUCG----CUUCGUAG-GAC-Gaga-UGCG- -5'
33117 3' -53.3 NC_007497.1 + 13529 0.67 0.709934
Target:  5'- gGUCG-GUGGGcGUGUCCUGCUgggcgGCGCu -3'
miRNA:   3'- -CAGCuCGCUU-CGUAGGACGAga---UGCG- -5'
33117 3' -53.3 NC_007497.1 + 36546 0.67 0.698788
Target:  5'- gGUCugcGGCGAGGCcgCCgaGCUCgauCGCc -3'
miRNA:   3'- -CAGc--UCGCUUCGuaGGa-CGAGau-GCG- -5'
33117 3' -53.3 NC_007497.1 + 28082 0.67 0.698788
Target:  5'- cGUUGAGCGAGuGCAUcgucgaCCUuC-CUACGCg -3'
miRNA:   3'- -CAGCUCGCUU-CGUA------GGAcGaGAUGCG- -5'
33117 3' -53.3 NC_007497.1 + 24492 0.67 0.687573
Target:  5'- cGUCGAGCu--GCAugUCgUGCUCgguCGCc -3'
miRNA:   3'- -CAGCUCGcuuCGU--AGgACGAGau-GCG- -5'
33117 3' -53.3 NC_007497.1 + 11710 0.67 0.676301
Target:  5'- -gCGAGUGAAGCAUCgauaGCcgaUGCGCu -3'
miRNA:   3'- caGCUCGCUUCGUAGga--CGag-AUGCG- -5'
33117 3' -53.3 NC_007497.1 + 4293 0.68 0.653634
Target:  5'- -aCGGGCGGcuGGCuuuugugcccgGUCCgauUGUUCUGCGCc -3'
miRNA:   3'- caGCUCGCU--UCG-----------UAGG---ACGAGAUGCG- -5'
33117 3' -53.3 NC_007497.1 + 191 0.68 0.630882
Target:  5'- gGUCGAGCuGGAGCcgUCUGUcgCcgcggUGCGCg -3'
miRNA:   3'- -CAGCUCG-CUUCGuaGGACGa-G-----AUGCG- -5'
33117 3' -53.3 NC_007497.1 + 9417 0.68 0.619502
Target:  5'- gGUCGAGCGAacgaAGCGaCCgGCgccaGCGCg -3'
miRNA:   3'- -CAGCUCGCU----UCGUaGGaCGaga-UGCG- -5'
33117 3' -53.3 NC_007497.1 + 15442 0.68 0.619502
Target:  5'- -cCGGGCGA--CGUCCUGCUg-AUGCa -3'
miRNA:   3'- caGCUCGCUucGUAGGACGAgaUGCG- -5'
33117 3' -53.3 NC_007497.1 + 19606 0.68 0.618365
Target:  5'- uGUCGGGCGGugagccguucugGGCAUUuaugccggagcagCUGUUCUACcGCg -3'
miRNA:   3'- -CAGCUCGCU------------UCGUAG-------------GACGAGAUG-CG- -5'
33117 3' -53.3 NC_007497.1 + 12716 0.68 0.608134
Target:  5'- -gCGAG-GGAGCAaCCggccgGCUCUACGg -3'
miRNA:   3'- caGCUCgCUUCGUaGGa----CGAGAUGCg -5'
33117 3' -53.3 NC_007497.1 + 35819 0.68 0.608134
Target:  5'- cGUCGAGCGGcugccGCGUugCUUGCgcgaUGCGCa -3'
miRNA:   3'- -CAGCUCGCUu----CGUA--GGACGag--AUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.