miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33117 5' -63.2 NC_007497.1 + 21561 0.66 0.295001
Target:  5'- -gGCGUGGGCGCagcucgucgaCGGCGuCUUggcGCUCGa -3'
miRNA:   3'- gaCGCACCUGCG----------GCCGCcGGA---CGAGC- -5'
33117 5' -63.2 NC_007497.1 + 40747 0.66 0.281068
Target:  5'- -aGCGguucggGGACG-CGGCGGCCgagacgGCaCGg -3'
miRNA:   3'- gaCGCa-----CCUGCgGCCGCCGGa-----CGaGC- -5'
33117 5' -63.2 NC_007497.1 + 17672 0.66 0.281068
Target:  5'- -gGCG-GGGCGgcgcaUCGGCGGCCguauccGCUCc -3'
miRNA:   3'- gaCGCaCCUGC-----GGCCGCCGGa-----CGAGc -5'
33117 5' -63.2 NC_007497.1 + 30455 0.66 0.274299
Target:  5'- -aGUGUcGGCGCCGGCuGCCUGg-CGu -3'
miRNA:   3'- gaCGCAcCUGCGGCCGcCGGACgaGC- -5'
33117 5' -63.2 NC_007497.1 + 36823 0.67 0.261154
Target:  5'- aUGCGU---UGCUGcGCGGCCUGCUg- -3'
miRNA:   3'- gACGCAccuGCGGC-CGCCGGACGAgc -5'
33117 5' -63.2 NC_007497.1 + 21159 0.67 0.230537
Target:  5'- -cGCaGUGGgucACgGCCGGCGGCCgcgUGCUg- -3'
miRNA:   3'- gaCG-CACC---UG-CGGCCGCCGG---ACGAgc -5'
33117 5' -63.2 NC_007497.1 + 5576 0.68 0.213659
Target:  5'- -cGCGU---CGgCGGCGGCCUGCUg- -3'
miRNA:   3'- gaCGCAccuGCgGCCGCCGGACGAgc -5'
33117 5' -63.2 NC_007497.1 + 17203 0.69 0.178372
Target:  5'- aCUGCGUGauccaGUCGGCGGCCgacgcGUUCa -3'
miRNA:   3'- -GACGCACcug--CGGCCGCCGGa----CGAGc -5'
33117 5' -63.2 NC_007497.1 + 10264 0.7 0.148356
Target:  5'- gCUGuUGUcGGugGUCGGCGGgCUGCcCGg -3'
miRNA:   3'- -GAC-GCA-CCugCGGCCGCCgGACGaGC- -5'
33117 5' -63.2 NC_007497.1 + 8677 0.72 0.113426
Target:  5'- aUGCGUGGGCuggcgucgacgGCCGGCGGCUauUUCa -3'
miRNA:   3'- gACGCACCUG-----------CGGCCGCCGGacGAGc -5'
33117 5' -63.2 NC_007497.1 + 40549 0.73 0.08871
Target:  5'- -cGCGU-GAUGCuCGGCGGCCaggacaaaccgaUGCUCGg -3'
miRNA:   3'- gaCGCAcCUGCG-GCCGCCGG------------ACGAGC- -5'
33117 5' -63.2 NC_007497.1 + 2544 0.77 0.0442
Target:  5'- -gGCGUGcGCGCCGGCGGCCgcgGCg-- -3'
miRNA:   3'- gaCGCACcUGCGGCCGCCGGa--CGagc -5'
33117 5' -63.2 NC_007497.1 + 16467 0.91 0.00368
Target:  5'- gCUGCGUGGACuG-CGGCGGCCUGCUCGa -3'
miRNA:   3'- -GACGCACCUG-CgGCCGCCGGACGAGC- -5'
33117 5' -63.2 NC_007497.1 + 14105 1.08 0.00016
Target:  5'- gCUGCGUGGACGCCGGCGGCCUGCUCGa -3'
miRNA:   3'- -GACGCACCUGCGGCCGCCGGACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.