miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33118 5' -54.9 NC_007497.1 + 10951 0.66 0.697422
Target:  5'- uGGAAGUUACUgacGAUCGAgaGCGacaCCGa -3'
miRNA:   3'- -UCUUCAGUGGa--CUAGUUggCGCg--GGC- -5'
33118 5' -54.9 NC_007497.1 + 860 0.66 0.686384
Target:  5'- aAGAAGagCACCUGAUUc-UCGC-CCCGa -3'
miRNA:   3'- -UCUUCa-GUGGACUAGuuGGCGcGGGC- -5'
33118 5' -54.9 NC_007497.1 + 23045 0.66 0.675292
Target:  5'- cAGAAGUCGCau--UCcGCCGCGCUUc -3'
miRNA:   3'- -UCUUCAGUGgacuAGuUGGCGCGGGc -5'
33118 5' -54.9 NC_007497.1 + 7893 0.66 0.652991
Target:  5'- cGAGGUCugCUGcacucaccgcCAACCGgGCCUc -3'
miRNA:   3'- uCUUCAGugGACua--------GUUGGCgCGGGc -5'
33118 5' -54.9 NC_007497.1 + 13991 0.67 0.641806
Target:  5'- aGGAaaGGUUgcuGCCUGAcCAACUGCuCCCGc -3'
miRNA:   3'- -UCU--UCAG---UGGACUaGUUGGCGcGGGC- -5'
33118 5' -54.9 NC_007497.1 + 2605 0.67 0.608238
Target:  5'- uGGAGUUcaagaGCUUGAUgCAACUGCGCgCGc -3'
miRNA:   3'- uCUUCAG-----UGGACUA-GUUGGCGCGgGC- -5'
33118 5' -54.9 NC_007497.1 + 34392 0.67 0.585948
Target:  5'- ---uGUCgaugACCUGAUCgAGCgGCGCCUGc -3'
miRNA:   3'- ucuuCAG----UGGACUAG-UUGgCGCGGGC- -5'
33118 5' -54.9 NC_007497.1 + 3132 0.68 0.552835
Target:  5'- aAGAGGUCGCgCgcauguacGGUguGCCGCGUCCc -3'
miRNA:   3'- -UCUUCAGUG-Ga-------CUAguUGGCGCGGGc -5'
33118 5' -54.9 NC_007497.1 + 12027 0.7 0.457736
Target:  5'- cGAAaccggUACCgUGAUCGGCCGCGCCg- -3'
miRNA:   3'- uCUUca---GUGG-ACUAGUUGGCGCGGgc -5'
33118 5' -54.9 NC_007497.1 + 21309 0.71 0.389256
Target:  5'- cGucGUgCACCUGAUCAGCgCGCGCgagaucgCCGa -3'
miRNA:   3'- uCuuCA-GUGGACUAGUUG-GCGCG-------GGC- -5'
33118 5' -54.9 NC_007497.1 + 26234 0.71 0.381065
Target:  5'- cAGAAGUagaaCACCUGccCGACCGCaaGCCCc -3'
miRNA:   3'- -UCUUCA----GUGGACuaGUUGGCG--CGGGc -5'
33118 5' -54.9 NC_007497.1 + 16257 0.72 0.34608
Target:  5'- uGGAgAGUCGCCgGAcagccuccauUCGACCGCGCgCGc -3'
miRNA:   3'- -UCU-UCAGUGGaCU----------AGUUGGCGCGgGC- -5'
33118 5' -54.9 NC_007497.1 + 15481 0.73 0.283217
Target:  5'- cGGAGUCGC--GAUCGGCUGCGUCUGg -3'
miRNA:   3'- uCUUCAGUGgaCUAGUUGGCGCGGGC- -5'
33118 5' -54.9 NC_007497.1 + 14369 1.08 0.000965
Target:  5'- gAGAAGUCACCUGAUCAACCGCGCCCGc -3'
miRNA:   3'- -UCUUCAGUGGACUAGUUGGCGCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.