miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33120 3' -56.4 NC_007497.1 + 9948 0.66 0.570282
Target:  5'- gAGAcCGCgGCCGcGCagggCGAGCUCGAGc -3'
miRNA:   3'- -UCUaGUGgUGGUaCGg---GCUCGAGCUU- -5'
33120 3' -56.4 NC_007497.1 + 36545 0.66 0.570282
Target:  5'- cGGUCugCGgCGagGCcgCCGAGCUCGAu -3'
miRNA:   3'- uCUAGugGUgGUa-CG--GGCUCGAGCUu -5'
33120 3' -56.4 NC_007497.1 + 1876 0.66 0.53723
Target:  5'- uGAUCGCCggccccauGCCGUGCUUucGCUUGAAa -3'
miRNA:   3'- uCUAGUGG--------UGGUACGGGcuCGAGCUU- -5'
33120 3' -56.4 NC_007497.1 + 2523 0.66 0.526356
Target:  5'- cGGUCcuGCCACUucUGCCCGGGCgugCGc- -3'
miRNA:   3'- uCUAG--UGGUGGu-ACGGGCUCGa--GCuu -5'
33120 3' -56.4 NC_007497.1 + 6753 0.67 0.515565
Target:  5'- cGGGUaucgcaACCGCCgGUGUCCGuGUUCGGAc -3'
miRNA:   3'- -UCUAg-----UGGUGG-UACGGGCuCGAGCUU- -5'
33120 3' -56.4 NC_007497.1 + 16131 0.67 0.515565
Target:  5'- cGAUCACCGguUCGaagGUCgCGAGCUCGGg -3'
miRNA:   3'- uCUAGUGGU--GGUa--CGG-GCUCGAGCUu -5'
33120 3' -56.4 NC_007497.1 + 19351 0.67 0.483762
Target:  5'- gGGggCGCCGaCAcgGCCUGAGUUCGAu -3'
miRNA:   3'- -UCuaGUGGUgGUa-CGGGCUCGAGCUu -5'
33120 3' -56.4 NC_007497.1 + 24300 0.67 0.47337
Target:  5'- uGAUCugCGCaagcuGUGCCUGAGCcUGAAu -3'
miRNA:   3'- uCUAGugGUGg----UACGGGCUCGaGCUU- -5'
33120 3' -56.4 NC_007497.1 + 42541 0.67 0.463091
Target:  5'- cGAagCGCCcgACCGUGgCCGAggGCUCGAAg -3'
miRNA:   3'- uCUa-GUGG--UGGUACgGGCU--CGAGCUU- -5'
33120 3' -56.4 NC_007497.1 + 43353 0.68 0.442893
Target:  5'- cAGAUCGCCuuuCCGUGgCCGcGCaaUCGGAc -3'
miRNA:   3'- -UCUAGUGGu--GGUACgGGCuCG--AGCUU- -5'
33120 3' -56.4 NC_007497.1 + 33325 0.68 0.439907
Target:  5'- cGGUCGCCACCGccucgacgcgcagcUGCgCGAuccgcuGCUCGAu -3'
miRNA:   3'- uCUAGUGGUGGU--------------ACGgGCU------CGAGCUu -5'
33120 3' -56.4 NC_007497.1 + 17844 0.68 0.423201
Target:  5'- -uAUCACC-CCG-GCCUGAGCUuCGGAa -3'
miRNA:   3'- ucUAGUGGuGGUaCGGGCUCGA-GCUU- -5'
33120 3' -56.4 NC_007497.1 + 28634 0.68 0.423201
Target:  5'- uGGUCcUCugCGuagaUGCCCGAGCUCGc- -3'
miRNA:   3'- uCUAGuGGugGU----ACGGGCUCGAGCuu -5'
33120 3' -56.4 NC_007497.1 + 26805 0.69 0.367419
Target:  5'- cGAUCGCCGCguacuUGCCCG-GCUCa-- -3'
miRNA:   3'- uCUAGUGGUGgu---ACGGGCuCGAGcuu -5'
33120 3' -56.4 NC_007497.1 + 23418 0.7 0.341486
Target:  5'- uGGAUCugCGCUucgAUGUCCGAuGCUCGc- -3'
miRNA:   3'- -UCUAGugGUGG---UACGGGCU-CGAGCuu -5'
33120 3' -56.4 NC_007497.1 + 14664 0.72 0.251252
Target:  5'- cGGAUCGCCgacGCCAUGCuCCGcGCgCGAGg -3'
miRNA:   3'- -UCUAGUGG---UGGUACG-GGCuCGaGCUU- -5'
33120 3' -56.4 NC_007497.1 + 14708 1.06 0.000763
Target:  5'- gAGAUCACCACCAUGCCCGAGCUCGAAg -3'
miRNA:   3'- -UCUAGUGGUGGUACGGGCUCGAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.