miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33120 5' -55.3 NC_007497.1 + 4208 0.68 0.528851
Target:  5'- cGGcgCcaUGCGCACGAAGCcgaGCAUCGGu -3'
miRNA:   3'- -CCaaGc-ACGCGUGCUUCG---CGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 1659 0.68 0.518178
Target:  5'- uGGcUCGcauggGCGCACGcuuGGGCGCACCc-- -3'
miRNA:   3'- -CCaAGCa----CGCGUGC---UUCGCGUGGcug -5'
33120 5' -55.3 NC_007497.1 + 9972 0.68 0.518178
Target:  5'- --cUCGaGCGUcCGAGGCGuCGCUGGCg -3'
miRNA:   3'- ccaAGCaCGCGuGCUUCGC-GUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 3669 0.68 0.518178
Target:  5'- --aUCG-GCGacaaCugGGAGgGCACCGGCg -3'
miRNA:   3'- ccaAGCaCGC----GugCUUCgCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 41566 0.68 0.514993
Target:  5'- cGGUUgCGUGUGCGCuGAAcaucGCGCugguuaucgcggagACCGGCc -3'
miRNA:   3'- -CCAA-GCACGCGUG-CUU----CGCG--------------UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 37538 0.69 0.507592
Target:  5'- cGGaa-GUGCGCACaGAAGCGC-CgGAa -3'
miRNA:   3'- -CCaagCACGCGUG-CUUCGCGuGgCUg -5'
33120 5' -55.3 NC_007497.1 + 41236 0.69 0.497098
Target:  5'- --cUCGagGCGCACGAGGUgaagggGCAUUGGCa -3'
miRNA:   3'- ccaAGCa-CGCGUGCUUCG------CGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 27874 0.69 0.497098
Target:  5'- ---aCGUG-GUACG-AGCGCACCGGg -3'
miRNA:   3'- ccaaGCACgCGUGCuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 44350 0.69 0.490849
Target:  5'- cGUcgCGUGuCGCgACGAugacgccuggaucguGGCGCGCUGGCa -3'
miRNA:   3'- cCAa-GCAC-GCG-UGCU---------------UCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 9416 0.69 0.486703
Target:  5'- uGG-UCGaGCGaACGAAGCG-ACCGGCg -3'
miRNA:   3'- -CCaAGCaCGCgUGCUUCGCgUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 5514 0.69 0.476413
Target:  5'- gGGUUCGcgUGCuGCGCGAucCGUACaCGGCg -3'
miRNA:   3'- -CCAAGC--ACG-CGUGCUucGCGUG-GCUG- -5'
33120 5' -55.3 NC_007497.1 + 40584 0.69 0.466231
Target:  5'- cGGcUUCGUGCGCAU--GGCGCcggaAUUGGCg -3'
miRNA:   3'- -CC-AAGCACGCGUGcuUCGCG----UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 38119 0.69 0.456163
Target:  5'- -uUUCG-GUGCGCGAGcGCGCGCCu-- -3'
miRNA:   3'- ccAAGCaCGCGUGCUU-CGCGUGGcug -5'
33120 5' -55.3 NC_007497.1 + 34560 0.7 0.446213
Target:  5'- ---cCGUGCGCAUGAgcgAGCcuGCGCgGGCg -3'
miRNA:   3'- ccaaGCACGCGUGCU---UCG--CGUGgCUG- -5'
33120 5' -55.3 NC_007497.1 + 29152 0.7 0.445225
Target:  5'- ---aCGUGCGUugGAcggugggAGCGCGCuCGAa -3'
miRNA:   3'- ccaaGCACGCGugCU-------UCGCGUG-GCUg -5'
33120 5' -55.3 NC_007497.1 + 34658 0.7 0.426684
Target:  5'- cGUUCG-GCGCGCuc-GCGCGCCuGCg -3'
miRNA:   3'- cCAAGCaCGCGUGcuuCGCGUGGcUG- -5'
33120 5' -55.3 NC_007497.1 + 26214 0.7 0.426684
Target:  5'- ---aCGUGUcCACGAGGCGCGCCc-- -3'
miRNA:   3'- ccaaGCACGcGUGCUUCGCGUGGcug -5'
33120 5' -55.3 NC_007497.1 + 30366 0.7 0.426684
Target:  5'- ---gCGUGCGCcgGCGAAacaccuuCGCACCGACc -3'
miRNA:   3'- ccaaGCACGCG--UGCUUc------GCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 13532 0.7 0.417112
Target:  5'- cGGUgggCGUGUccuGCugGGcGGCGCuuCCGACg -3'
miRNA:   3'- -CCAa--GCACG---CGugCU-UCGCGu-GGCUG- -5'
33120 5' -55.3 NC_007497.1 + 31483 0.71 0.388289
Target:  5'- -cUUCGUagcacGCGCcagcuuuGCGAAGCGCAUCGAg -3'
miRNA:   3'- ccAAGCA-----CGCG-------UGCUUCGCGUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.