miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33121 3' -56.1 NC_007497.1 + 30223 0.66 0.555779
Target:  5'- cGACGACAGCGUgaacucgaCCUGCaCGCC-CGg -3'
miRNA:   3'- uUUGCUGUUGCG--------GGACGaGCGGaGUa -5'
33121 3' -56.1 NC_007497.1 + 5365 0.66 0.522698
Target:  5'- uAGACGACGaccugacgcguACGUCCggcgcGCUCGCC-CGUg -3'
miRNA:   3'- -UUUGCUGU-----------UGCGGGa----CGAGCGGaGUA- -5'
33121 3' -56.1 NC_007497.1 + 32797 0.67 0.511836
Target:  5'- aGAGCGA--GCGCCCgGCUCGCgC-CAa -3'
miRNA:   3'- -UUUGCUguUGCGGGaCGAGCG-GaGUa -5'
33121 3' -56.1 NC_007497.1 + 27765 0.67 0.501069
Target:  5'- -uGCGGC-GCGgCCUGCUUGCCa--- -3'
miRNA:   3'- uuUGCUGuUGCgGGACGAGCGGagua -5'
33121 3' -56.1 NC_007497.1 + 36771 0.67 0.501069
Target:  5'- --cCGGCucGACGCCC-GC-CGCCUCGc -3'
miRNA:   3'- uuuGCUG--UUGCGGGaCGaGCGGAGUa -5'
33121 3' -56.1 NC_007497.1 + 14477 0.67 0.479844
Target:  5'- cAACGACAGCGaCCUGaaCGCCaUCGc -3'
miRNA:   3'- uUUGCUGUUGCgGGACgaGCGG-AGUa -5'
33121 3' -56.1 NC_007497.1 + 1450 0.67 0.479844
Target:  5'- aAGGCGAUcugcACGCCgUGCUCcGUCUCGg -3'
miRNA:   3'- -UUUGCUGu---UGCGGgACGAG-CGGAGUa -5'
33121 3' -56.1 NC_007497.1 + 37296 0.67 0.478794
Target:  5'- cGGACGACugacCGCCCUGCcauugaaUCGUCUUg- -3'
miRNA:   3'- -UUUGCUGuu--GCGGGACG-------AGCGGAGua -5'
33121 3' -56.1 NC_007497.1 + 34256 0.68 0.44886
Target:  5'- gGAACGAUGACGCUCUGCgaggCGCg---- -3'
miRNA:   3'- -UUUGCUGUUGCGGGACGa---GCGgagua -5'
33121 3' -56.1 NC_007497.1 + 21578 0.69 0.363103
Target:  5'- --cCGGCGACGCCCucgaucUGCUUGCCg--- -3'
miRNA:   3'- uuuGCUGUUGCGGG------ACGAGCGGagua -5'
33121 3' -56.1 NC_007497.1 + 27048 0.7 0.337153
Target:  5'- gAAGCGAucaccCGGCGCCaCUGCgggCGCCUUGUc -3'
miRNA:   3'- -UUUGCU-----GUUGCGG-GACGa--GCGGAGUA- -5'
33121 3' -56.1 NC_007497.1 + 12128 0.7 0.312581
Target:  5'- gGAGCGAaAGCGCCC---UCGCCUCGUa -3'
miRNA:   3'- -UUUGCUgUUGCGGGacgAGCGGAGUA- -5'
33121 3' -56.1 NC_007497.1 + 10214 0.72 0.253779
Target:  5'- cAAACGGCGGcCGCCCgcgcagGCUCG-CUCAUg -3'
miRNA:   3'- -UUUGCUGUU-GCGGGa-----CGAGCgGAGUA- -5'
33121 3' -56.1 NC_007497.1 + 21863 0.73 0.204376
Target:  5'- cGACGACAGCgGCCCUGaCUCGUCg--- -3'
miRNA:   3'- uUUGCUGUUG-CGGGAC-GAGCGGagua -5'
33121 3' -56.1 NC_007497.1 + 15402 1.04 0.001125
Target:  5'- aAAACGACAACGCCCUGCUCGCCUCAUg -3'
miRNA:   3'- -UUUGCUGUUGCGGGACGAGCGGAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.