miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33123 5' -55.2 NC_007497.1 + 16244 0.66 0.613567
Target:  5'- -gCGGCGGCGGCGguggagaguCGCCGGacaGCCUc -3'
miRNA:   3'- aaGUUGUCGCCGC---------GUGGCUauaCGGA- -5'
33123 5' -55.2 NC_007497.1 + 27979 0.66 0.613567
Target:  5'- cUCGAuCGGUgGGCGUAUCGAUcgGCgCUg -3'
miRNA:   3'- aAGUU-GUCG-CCGCGUGGCUAuaCG-GA- -5'
33123 5' -55.2 NC_007497.1 + 19202 0.66 0.602184
Target:  5'- -aCAACGGCGGCuCGauGAUcGUGCCa -3'
miRNA:   3'- aaGUUGUCGCCGcGUggCUA-UACGGa -5'
33123 5' -55.2 NC_007497.1 + 25896 0.66 0.602184
Target:  5'- -aCAGCAGCGGacaGCGuuGcgGUcGCCg -3'
miRNA:   3'- aaGUUGUCGCCg--CGUggCuaUA-CGGa -5'
33123 5' -55.2 NC_007497.1 + 21292 0.66 0.59083
Target:  5'- -gCGGCGGCGG-GCGCCGGcgucGUGCa- -3'
miRNA:   3'- aaGUUGUCGCCgCGUGGCUa---UACGga -5'
33123 5' -55.2 NC_007497.1 + 9081 0.66 0.59083
Target:  5'- aUCAgcaagGCGGUGGCGCuguCCGGcguaUcgGCCg -3'
miRNA:   3'- aAGU-----UGUCGCCGCGu--GGCU----AuaCGGa -5'
33123 5' -55.2 NC_007497.1 + 25784 0.67 0.568241
Target:  5'- cUUCGAgAGCGGCGCGaaguucggugaCGGUuugGCCg -3'
miRNA:   3'- -AAGUUgUCGCCGCGUg----------GCUAua-CGGa -5'
33123 5' -55.2 NC_007497.1 + 15092 0.67 0.545876
Target:  5'- -aCGGCA-CGGCGCAgCCGAgcaugGCCg -3'
miRNA:   3'- aaGUUGUcGCCGCGU-GGCUaua--CGGa -5'
33123 5' -55.2 NC_007497.1 + 27100 0.67 0.523801
Target:  5'- -cCGGCAGCGGaGCggauacggccGCCGAUGcGCCg -3'
miRNA:   3'- aaGUUGUCGCCgCG----------UGGCUAUaCGGa -5'
33123 5' -55.2 NC_007497.1 + 40745 0.67 0.523801
Target:  5'- aUCAugGCGGCGGcCGUcucuuCCGAgAUGCCg -3'
miRNA:   3'- aAGU--UGUCGCC-GCGu----GGCUaUACGGa -5'
33123 5' -55.2 NC_007497.1 + 17671 0.67 0.523801
Target:  5'- --aGGCggGGCGGCGCAUCGGcg-GCCg -3'
miRNA:   3'- aagUUG--UCGCCGCGUGGCUauaCGGa -5'
33123 5' -55.2 NC_007497.1 + 5821 0.67 0.512891
Target:  5'- --gAGCGGuCGGCGCACUGGaggGUGCg- -3'
miRNA:   3'- aagUUGUC-GCCGCGUGGCUa--UACGga -5'
33123 5' -55.2 NC_007497.1 + 10785 0.67 0.512891
Target:  5'- -cCGACAGgGGCGCGCgcacgcuggcagCGAUGgacGCCg -3'
miRNA:   3'- aaGUUGUCgCCGCGUG------------GCUAUa--CGGa -5'
33123 5' -55.2 NC_007497.1 + 38165 0.67 0.512891
Target:  5'- -gCGACcGUGGCGCGCCuGAgc-GCCUu -3'
miRNA:   3'- aaGUUGuCGCCGCGUGG-CUauaCGGA- -5'
33123 5' -55.2 NC_007497.1 + 3805 0.68 0.480753
Target:  5'- ----cCGGCGGCGCAUCGAUcccaucgcugAUGUCg -3'
miRNA:   3'- aaguuGUCGCCGCGUGGCUA----------UACGGa -5'
33123 5' -55.2 NC_007497.1 + 9708 0.68 0.480753
Target:  5'- -gCGGCGgaggucGCGGCGCagGCCGAgcuUGCCg -3'
miRNA:   3'- aaGUUGU------CGCCGCG--UGGCUau-ACGGa -5'
33123 5' -55.2 NC_007497.1 + 44312 0.68 0.470259
Target:  5'- aUCAaccGCGGCGGUGCcgccggagcaaACCGGcuUGCCg -3'
miRNA:   3'- aAGU---UGUCGCCGCG-----------UGGCUauACGGa -5'
33123 5' -55.2 NC_007497.1 + 10762 0.69 0.409925
Target:  5'- -aCGACAuGUaGGCGCACCGuaagcAUGCCUc -3'
miRNA:   3'- aaGUUGU-CG-CCGCGUGGCua---UACGGA- -5'
33123 5' -55.2 NC_007497.1 + 18023 0.7 0.390908
Target:  5'- aUUCAGCAGCGGC-CGgugaCGGUcGUGCCg -3'
miRNA:   3'- -AAGUUGUCGCCGcGUg---GCUA-UACGGa -5'
33123 5' -55.2 NC_007497.1 + 42360 0.72 0.282015
Target:  5'- ----cCAGCGGCGCACCGGcacUGCUa -3'
miRNA:   3'- aaguuGUCGCCGCGUGGCUau-ACGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.