miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33124 3' -63 NC_007497.1 + 21255 0.66 0.319474
Target:  5'- uGuGGAGCGCG-CGCUCauGCGcuACUGCu -3'
miRNA:   3'- gC-CCUCGCGCgGCGAG--CGCacUGGCG- -5'
33124 3' -63 NC_007497.1 + 24743 0.66 0.312054
Target:  5'- gGGGAGCGCGUaaacgaaaaaagCGcCUCGCGg---CGCu -3'
miRNA:   3'- gCCCUCGCGCG------------GC-GAGCGCacugGCG- -5'
33124 3' -63 NC_007497.1 + 3327 0.66 0.312054
Target:  5'- aCGaGGGCGCGCUGUU-GCGcGGCaCGCu -3'
miRNA:   3'- -GCcCUCGCGCGGCGAgCGCaCUG-GCG- -5'
33124 3' -63 NC_007497.1 + 20581 0.66 0.304766
Target:  5'- gGGGAGCGUuacuGCCGUg-GCGUcgUCGCu -3'
miRNA:   3'- gCCCUCGCG----CGGCGagCGCAcuGGCG- -5'
33124 3' -63 NC_007497.1 + 42001 0.66 0.29761
Target:  5'- gGGGAGCG-GCCgaaccggaacGCUCGgGcUGGCCa- -3'
miRNA:   3'- gCCCUCGCgCGG----------CGAGCgC-ACUGGcg -5'
33124 3' -63 NC_007497.1 + 32616 0.66 0.290585
Target:  5'- ---aGGCGCcaauGCCGCUCGCGcagcGaACCGCg -3'
miRNA:   3'- gcccUCGCG----CGGCGAGCGCa---C-UGGCG- -5'
33124 3' -63 NC_007497.1 + 15227 0.67 0.276925
Target:  5'- gCGGauauGuCGCGCCGCU-GUaUGGCCGCg -3'
miRNA:   3'- -GCCcu--C-GCGCGGCGAgCGcACUGGCG- -5'
33124 3' -63 NC_007497.1 + 34732 0.67 0.276925
Target:  5'- aGcGAGCGcCGCCGCguagCGCGUcuGAUCGa -3'
miRNA:   3'- gCcCUCGC-GCGGCGa---GCGCA--CUGGCg -5'
33124 3' -63 NC_007497.1 + 34935 0.67 0.270289
Target:  5'- --cGAGCGgGCCG-UCGCGaccugugcGACCGCa -3'
miRNA:   3'- gccCUCGCgCGGCgAGCGCa-------CUGGCG- -5'
33124 3' -63 NC_007497.1 + 44667 0.67 0.257403
Target:  5'- uCGcGGGGCuGUaGCCuGC-CGCGaUGGCCGCg -3'
miRNA:   3'- -GC-CCUCG-CG-CGG-CGaGCGC-ACUGGCG- -5'
33124 3' -63 NC_007497.1 + 44764 0.67 0.256772
Target:  5'- aGGGGGUGCcaaaagucugaugGCCGcCUCGgCcuaGACCGCa -3'
miRNA:   3'- gCCCUCGCG-------------CGGC-GAGC-Gca-CUGGCG- -5'
33124 3' -63 NC_007497.1 + 5285 0.67 0.251151
Target:  5'- aCGGGcaaCGC-CCGCuUCGCGaUGaACCGCa -3'
miRNA:   3'- -GCCCuc-GCGcGGCG-AGCGC-AC-UGGCG- -5'
33124 3' -63 NC_007497.1 + 40114 0.68 0.227387
Target:  5'- uCGGGAucGCGCagcggcuucacGCCGUUCGCGcccaucugcgcUG-CCGCg -3'
miRNA:   3'- -GCCCU--CGCG-----------CGGCGAGCGC-----------ACuGGCG- -5'
33124 3' -63 NC_007497.1 + 18534 0.68 0.221751
Target:  5'- gCGGGucgaGGCGCuugaGCCGCUUaucCGUG-CCGCa -3'
miRNA:   3'- -GCCC----UCGCG----CGGCGAGc--GCACuGGCG- -5'
33124 3' -63 NC_007497.1 + 12971 0.68 0.221751
Target:  5'- -uGGAGC-CGCCGCUC-CG--GCCGCa -3'
miRNA:   3'- gcCCUCGcGCGGCGAGcGCacUGGCG- -5'
33124 3' -63 NC_007497.1 + 2886 0.68 0.218427
Target:  5'- gCGGagcaagccGAGCGCGCCGCUucaCggacguuccgaacugGCGUGAUgGCg -3'
miRNA:   3'- -GCC--------CUCGCGCGGCGA---G---------------CGCACUGgCG- -5'
33124 3' -63 NC_007497.1 + 14754 0.69 0.210836
Target:  5'- gCGGGuGCGaaCGCCgGUUCgGCGUGAauaacCCGCu -3'
miRNA:   3'- -GCCCuCGC--GCGG-CGAG-CGCACU-----GGCG- -5'
33124 3' -63 NC_007497.1 + 13794 0.69 0.205554
Target:  5'- aCGGGAcGcCGCagggGCCGC-CGCaugGGCCGCa -3'
miRNA:   3'- -GCCCU-C-GCG----CGGCGaGCGca-CUGGCG- -5'
33124 3' -63 NC_007497.1 + 10138 0.69 0.202441
Target:  5'- gCGcGAGCGCGCCGaacgaggcgccacCGCGgcGACCGCc -3'
miRNA:   3'- -GCcCUCGCGCGGCga-----------GCGCa-CUGGCG- -5'
33124 3' -63 NC_007497.1 + 10991 0.69 0.195334
Target:  5'- aGGGGGCGaacgcaGCCGaggCGCGgcaGGCCGg -3'
miRNA:   3'- gCCCUCGCg-----CGGCga-GCGCa--CUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.