miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33126 3' -55.7 NC_007497.1 + 2598 0.66 0.628675
Target:  5'- aCGCCGAuggaguucaagaGCUUgaugcaacugcgCGCGCUGCUCgacggCGAGu -3'
miRNA:   3'- aGUGGCU------------UGAA------------GCGCGGCGAGa----GCUU- -5'
33126 3' -55.7 NC_007497.1 + 39868 0.66 0.594011
Target:  5'- aCGCUGGcuuGCUUCGCcgacccaGCCGCUCgUCGu- -3'
miRNA:   3'- aGUGGCU---UGAAGCG-------CGGCGAG-AGCuu -5'
33126 3' -55.7 NC_007497.1 + 36637 0.67 0.5718
Target:  5'- gUCGCCGAA-UUCGCGaCGCcaccccugggcggUCUCGAc -3'
miRNA:   3'- -AGUGGCUUgAAGCGCgGCG-------------AGAGCUu -5'
33126 3' -55.7 NC_007497.1 + 26771 0.68 0.518374
Target:  5'- gUCACCGGccgcuGCUgaaucugCGCGCCGUcgUCGAu -3'
miRNA:   3'- -AGUGGCU-----UGAa------GCGCGGCGagAGCUu -5'
33126 3' -55.7 NC_007497.1 + 37726 0.68 0.466019
Target:  5'- gCACUGAGCUaUGCGCCGUcC-CGAGg -3'
miRNA:   3'- aGUGGCUUGAaGCGCGGCGaGaGCUU- -5'
33126 3' -55.7 NC_007497.1 + 22817 0.69 0.445851
Target:  5'- aCACCGGGCgcaGaCGCCGaaCUCGAAa -3'
miRNA:   3'- aGUGGCUUGaagC-GCGGCgaGAGCUU- -5'
33126 3' -55.7 NC_007497.1 + 3554 0.7 0.397666
Target:  5'- cCACCG-GCUUgGCGCgGCUCaauUCGAc -3'
miRNA:   3'- aGUGGCuUGAAgCGCGgCGAG---AGCUu -5'
33126 3' -55.7 NC_007497.1 + 11609 0.7 0.37935
Target:  5'- uUCGCgCGGcCUacgaUCGCGCCGUgcagCUCGAAa -3'
miRNA:   3'- -AGUG-GCUuGA----AGCGCGGCGa---GAGCUU- -5'
33126 3' -55.7 NC_007497.1 + 28493 0.7 0.366869
Target:  5'- uUCACCGAugaugucgagcacCUUCGCGCgCGCggUCGAAu -3'
miRNA:   3'- -AGUGGCUu------------GAAGCGCG-GCGagAGCUU- -5'
33126 3' -55.7 NC_007497.1 + 11052 0.71 0.336095
Target:  5'- aUCACCGGAUUUCGC-CUGCgcgaaaggCUCGGc -3'
miRNA:   3'- -AGUGGCUUGAAGCGcGGCGa-------GAGCUu -5'
33126 3' -55.7 NC_007497.1 + 17518 0.71 0.327887
Target:  5'- gCGCgGAACUUgcaCGCGCCGCauUCUCGc- -3'
miRNA:   3'- aGUGgCUUGAA---GCGCGGCG--AGAGCuu -5'
33126 3' -55.7 NC_007497.1 + 41056 0.72 0.304161
Target:  5'- uUCACCGuGACUUCGCGCgCGC-CgauguugCGAAg -3'
miRNA:   3'- -AGUGGC-UUGAAGCGCG-GCGaGa------GCUU- -5'
33126 3' -55.7 NC_007497.1 + 18824 0.73 0.267591
Target:  5'- cCGCCGAcgccaucgacACcUUGCucGCCGCUCUCGAAu -3'
miRNA:   3'- aGUGGCU----------UGaAGCG--CGGCGAGAGCUU- -5'
33126 3' -55.7 NC_007497.1 + 16666 0.74 0.216576
Target:  5'- aCGCCGGGag-CGCGCCGCUCgcgUGAc -3'
miRNA:   3'- aGUGGCUUgaaGCGCGGCGAGa--GCUu -5'
33126 3' -55.7 NC_007497.1 + 36216 0.76 0.16473
Target:  5'- cCGCCacGAACUUCGgGCCGCgCUCGGu -3'
miRNA:   3'- aGUGG--CUUGAAGCgCGGCGaGAGCUu -5'
33126 3' -55.7 NC_007497.1 + 7959 0.76 0.151499
Target:  5'- gUUACCGucGCUgugCGCgaGCCGCUCUCGAGg -3'
miRNA:   3'- -AGUGGCu-UGAa--GCG--CGGCGAGAGCUU- -5'
33126 3' -55.7 NC_007497.1 + 38409 0.82 0.058364
Target:  5'- aUCGCCGAGCUUCGUaCCGCUC-CGGAa -3'
miRNA:   3'- -AGUGGCUUGAAGCGcGGCGAGaGCUU- -5'
33126 3' -55.7 NC_007497.1 + 19002 1.07 0.000955
Target:  5'- gUCACCGAACUUCGCGCCGCUCUCGAAg -3'
miRNA:   3'- -AGUGGCUUGAAGCGCGGCGAGAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.