miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33127 3' -52.8 NC_007497.1 + 14939 0.66 0.828075
Target:  5'- aUCGACGCgGCGCUGAucaaagccggcCGgaaaagGCGCc- -3'
miRNA:   3'- gAGCUGCGaUGCGACU-----------GCaa----UGCGcu -5'
33127 3' -52.8 NC_007497.1 + 34660 0.66 0.828075
Target:  5'- uUCGGCGCgcucGCGCgccuGCGU--CGCGAu -3'
miRNA:   3'- gAGCUGCGa---UGCGac--UGCAauGCGCU- -5'
33127 3' -52.8 NC_007497.1 + 15411 0.66 0.828075
Target:  5'- uCUCGACGUcggcCGC-GACGUgGCGCu- -3'
miRNA:   3'- -GAGCUGCGau--GCGaCUGCAaUGCGcu -5'
33127 3' -52.8 NC_007497.1 + 4300 0.66 0.828075
Target:  5'- --gGGCGCUgGCGaaGACGUUGCaGCGu -3'
miRNA:   3'- gagCUGCGA-UGCgaCUGCAAUG-CGCu -5'
33127 3' -52.8 NC_007497.1 + 26271 0.66 0.818704
Target:  5'- -aCGACGUggACGCcuGCGgaUACGCGAa -3'
miRNA:   3'- gaGCUGCGa-UGCGacUGCa-AUGCGCU- -5'
33127 3' -52.8 NC_007497.1 + 18260 0.66 0.818704
Target:  5'- --gGGCGCUACGUcGcGCGUgUGCGCGc -3'
miRNA:   3'- gagCUGCGAUGCGaC-UGCA-AUGCGCu -5'
33127 3' -52.8 NC_007497.1 + 27999 0.66 0.818704
Target:  5'- aUCGGCGCUGaugcggGCUGcuCGUccgccgGCGCGGg -3'
miRNA:   3'- gAGCUGCGAUg-----CGACu-GCAa-----UGCGCU- -5'
33127 3' -52.8 NC_007497.1 + 43799 0.66 0.799357
Target:  5'- -aCGACGCU-CGaCUGACGcggUGCGUu- -3'
miRNA:   3'- gaGCUGCGAuGC-GACUGCa--AUGCGcu -5'
33127 3' -52.8 NC_007497.1 + 40221 0.66 0.789403
Target:  5'- aUCGACGCaagACGCggcgcuCGUUGCauggGCGAa -3'
miRNA:   3'- gAGCUGCGa--UGCGacu---GCAAUG----CGCU- -5'
33127 3' -52.8 NC_007497.1 + 8987 0.66 0.789403
Target:  5'- gCUCGACGCgacgGCggaGCUGuaucaGCGgauCGCGAa -3'
miRNA:   3'- -GAGCUGCGa---UG---CGAC-----UGCaauGCGCU- -5'
33127 3' -52.8 NC_007497.1 + 28364 0.67 0.779278
Target:  5'- -aUGAUGCUGCGCUcGACcUU-CGUGAg -3'
miRNA:   3'- gaGCUGCGAUGCGA-CUGcAAuGCGCU- -5'
33127 3' -52.8 NC_007497.1 + 16867 0.67 0.768994
Target:  5'- -cCGAUGaCUGCGCucguggguaUGACGUUcgACGCGc -3'
miRNA:   3'- gaGCUGC-GAUGCG---------ACUGCAA--UGCGCu -5'
33127 3' -52.8 NC_007497.1 + 22779 0.67 0.758562
Target:  5'- gCUCGAUgguggGCUauggAUGCUGACGggcACGCGu -3'
miRNA:   3'- -GAGCUG-----CGA----UGCGACUGCaa-UGCGCu -5'
33127 3' -52.8 NC_007497.1 + 9981 0.67 0.758562
Target:  5'- -cCGAgGCguCGCUGGCGUUgGCGCa- -3'
miRNA:   3'- gaGCUgCGauGCGACUGCAA-UGCGcu -5'
33127 3' -52.8 NC_007497.1 + 39484 0.67 0.758562
Target:  5'- -cUGACGCUGCGUguuGCGguucauCGCGAa -3'
miRNA:   3'- gaGCUGCGAUGCGac-UGCaau---GCGCU- -5'
33127 3' -52.8 NC_007497.1 + 33060 0.67 0.747994
Target:  5'- uCUCG-CGCgaccucuCGCUGACGcucggACGCGu -3'
miRNA:   3'- -GAGCuGCGau-----GCGACUGCaa---UGCGCu -5'
33127 3' -52.8 NC_007497.1 + 11967 0.67 0.747994
Target:  5'- gCUC-ACGUUgaGCGCgauUGGCGUguugGCGCGAg -3'
miRNA:   3'- -GAGcUGCGA--UGCG---ACUGCAa---UGCGCU- -5'
33127 3' -52.8 NC_007497.1 + 8794 0.67 0.737303
Target:  5'- aUCGAgGCUGCGCgcgGgucgcuucGCGgaUACGCGGa -3'
miRNA:   3'- gAGCUgCGAUGCGa--C--------UGCa-AUGCGCU- -5'
33127 3' -52.8 NC_007497.1 + 21602 0.67 0.737303
Target:  5'- -cCGACGUgcucggccGCGUUGACGagcGCGCGGg -3'
miRNA:   3'- gaGCUGCGa-------UGCGACUGCaa-UGCGCU- -5'
33127 3' -52.8 NC_007497.1 + 37016 0.68 0.704616
Target:  5'- uUCGGCGCgcCGCUGACccgaACGCu- -3'
miRNA:   3'- gAGCUGCGauGCGACUGcaa-UGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.