miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33127 5' -54.2 NC_007497.1 + 18517 0.66 0.696768
Target:  5'- ----cGCGUaUCCGCaGGCGuCCACGUCg -3'
miRNA:   3'- acagaCGUA-AGGUGgUCGC-GGUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 28012 0.66 0.696768
Target:  5'- cGggCUGCucgUCCGCCGGCGCgGg--- -3'
miRNA:   3'- aCa-GACGua-AGGUGGUCGCGgUguag -5'
33127 5' -54.2 NC_007497.1 + 28539 0.66 0.696768
Target:  5'- cUGUCcgGCGacucUCCACCGcCGCCGCcgCc -3'
miRNA:   3'- -ACAGa-CGUa---AGGUGGUcGCGGUGuaG- -5'
33127 5' -54.2 NC_007497.1 + 29352 0.66 0.684352
Target:  5'- -aUCaGCAggacgUCGCCcgguucgAGCGCCACGUCg -3'
miRNA:   3'- acAGaCGUaa---GGUGG-------UCGCGGUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 44591 0.66 0.662763
Target:  5'- -uUCUGCAcacggUUCGCCgcgauauaaAGgGCCACAUCc -3'
miRNA:   3'- acAGACGUa----AGGUGG---------UCgCGGUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 33654 0.66 0.661623
Target:  5'- -aUCUGCugaUUCAUCAGCGCgagcucgCGCGUCa -3'
miRNA:   3'- acAGACGua-AGGUGGUCGCG-------GUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 15499 0.67 0.60562
Target:  5'- cGUCUGguUUCU--CuGCGCCGCAUa -3'
miRNA:   3'- aCAGACguAAGGugGuCGCGGUGUAg -5'
33127 5' -54.2 NC_007497.1 + 18227 0.67 0.602198
Target:  5'- gGUCUGCAggUugagaucccgggcaUCUAUCaggGGCGCUACGUCg -3'
miRNA:   3'- aCAGACGU--A--------------AGGUGG---UCGCGGUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 23155 0.67 0.58286
Target:  5'- gGUCagcGUAUUCCGCCAGCucucCCGCGcgcUCg -3'
miRNA:   3'- aCAGa--CGUAAGGUGGUCGc---GGUGU---AG- -5'
33127 5' -54.2 NC_007497.1 + 5519 0.68 0.571542
Target:  5'- cGUUUGCGUagUCgGCgAGCGCCAUc-- -3'
miRNA:   3'- aCAGACGUA--AGgUGgUCGCGGUGuag -5'
33127 5' -54.2 NC_007497.1 + 30680 0.68 0.571542
Target:  5'- -uUCgaGCAggCCGCCGGCGuCCACGc- -3'
miRNA:   3'- acAGa-CGUaaGGUGGUCGC-GGUGUag -5'
33127 5' -54.2 NC_007497.1 + 29848 0.68 0.571542
Target:  5'- gGcCgGC-UUUgAUCAGCGCCGCGUCg -3'
miRNA:   3'- aCaGaCGuAAGgUGGUCGCGGUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 40489 0.68 0.560277
Target:  5'- cG-CUGCAacgucUUCGCCAGCGCCcgGCGUg -3'
miRNA:   3'- aCaGACGUa----AGGUGGUCGCGG--UGUAg -5'
33127 5' -54.2 NC_007497.1 + 40048 0.68 0.549075
Target:  5'- gUGUUcGCGUUCUACaAGCGCgACGUUu -3'
miRNA:   3'- -ACAGaCGUAAGGUGgUCGCGgUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 28656 0.69 0.47305
Target:  5'- cGUUUcCAUgcUCgGCCAuGCGCCGCAUCc -3'
miRNA:   3'- aCAGAcGUA--AGgUGGU-CGCGGUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 26646 0.71 0.402694
Target:  5'- -aUUUGCAUUCCGUCAGgGCgACGUCc -3'
miRNA:   3'- acAGACGUAAGGUGGUCgCGgUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 26017 0.72 0.347934
Target:  5'- -aUCUGCGcagcuucgCCGCCAGCGCUuuCAUCu -3'
miRNA:   3'- acAGACGUaa------GGUGGUCGCGGu-GUAG- -5'
33127 5' -54.2 NC_007497.1 + 23049 0.72 0.347934
Target:  5'- aGUC-GCAUUCCGCC-GCGCUuCGUUa -3'
miRNA:   3'- aCAGaCGUAAGGUGGuCGCGGuGUAG- -5'
33127 5' -54.2 NC_007497.1 + 35113 0.72 0.314491
Target:  5'- -uUCUGCAgUUUCGCC-GCaGCCGCAUCg -3'
miRNA:   3'- acAGACGU-AAGGUGGuCG-CGGUGUAG- -5'
33127 5' -54.2 NC_007497.1 + 37701 0.73 0.291043
Target:  5'- cGUC-GC--UCCGCCaAGCGCCAUGUCu -3'
miRNA:   3'- aCAGaCGuaAGGUGG-UCGCGGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.