miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33128 5' -53.7 NC_007497.1 + 18216 0.66 0.764622
Target:  5'- cGCAGaCGGGCGgucugcagguugagaUccCGGGCAUCuaucaGggGCGCu -3'
miRNA:   3'- -UGUC-GCUCGU---------------A--GCCUGUAG-----CuuCGCG- -5'
33128 5' -53.7 NC_007497.1 + 40233 0.66 0.764622
Target:  5'- --cGCcaacGCGUCGGACGUCGGcagacccgccuucacGGCGUc -3'
miRNA:   3'- uguCGcu--CGUAGCCUGUAGCU---------------UCGCG- -5'
33128 5' -53.7 NC_007497.1 + 13925 0.66 0.760427
Target:  5'- -uGGCGGGCAguuugCGGGgAUCGAcGGCc- -3'
miRNA:   3'- ugUCGCUCGUa----GCCUgUAGCU-UCGcg -5'
33128 5' -53.7 NC_007497.1 + 28803 0.66 0.760427
Target:  5'- uCGGCGcGCA-CGGAUcgagAUCGAacucgccgAGCGCu -3'
miRNA:   3'- uGUCGCuCGUaGCCUG----UAGCU--------UCGCG- -5'
33128 5' -53.7 NC_007497.1 + 40718 0.66 0.759375
Target:  5'- gGCGcGCGAGCucAUCGcGGCGguacgcgagcgguUCGggGaCGCg -3'
miRNA:   3'- -UGU-CGCUCG--UAGC-CUGU-------------AGCuuC-GCG- -5'
33128 5' -53.7 NC_007497.1 + 11099 0.66 0.749845
Target:  5'- cCGGCGcaCGUCGGaACAUCGAcaaucugacGCGCg -3'
miRNA:   3'- uGUCGCucGUAGCC-UGUAGCUu--------CGCG- -5'
33128 5' -53.7 NC_007497.1 + 24560 0.66 0.739136
Target:  5'- cCAGCGGccuGCuUCGGAUcggaGAAGCGUa -3'
miRNA:   3'- uGUCGCU---CGuAGCCUGuag-CUUCGCG- -5'
33128 5' -53.7 NC_007497.1 + 43858 0.66 0.739136
Target:  5'- gGCGcGCGAuCAUCGaaGGCGUCuucgggguGAAGCGCa -3'
miRNA:   3'- -UGU-CGCUcGUAGC--CUGUAG--------CUUCGCG- -5'
33128 5' -53.7 NC_007497.1 + 34818 0.66 0.728314
Target:  5'- cCAGCGAcGCcUCGGcACGcUCGAGcucgcccuGCGCg -3'
miRNA:   3'- uGUCGCU-CGuAGCC-UGU-AGCUU--------CGCG- -5'
33128 5' -53.7 NC_007497.1 + 13567 0.66 0.728314
Target:  5'- cGCAGCaagGAuGCGUUGGACGUugCGGAaCGCu -3'
miRNA:   3'- -UGUCG---CU-CGUAGCCUGUA--GCUUcGCG- -5'
33128 5' -53.7 NC_007497.1 + 34570 0.66 0.728314
Target:  5'- -gAGCGAGCcugcgCGGGCGgccgcCGuuuGCGCg -3'
miRNA:   3'- ugUCGCUCGua---GCCUGUa----GCuu-CGCG- -5'
33128 5' -53.7 NC_007497.1 + 2403 0.66 0.721771
Target:  5'- cGCGGCGAGCugaaugguggcacggGUCGcgaGACG-CG-AGCGCu -3'
miRNA:   3'- -UGUCGCUCG---------------UAGC---CUGUaGCuUCGCG- -5'
33128 5' -53.7 NC_007497.1 + 10771 0.66 0.71739
Target:  5'- gGCAG-GGGCcgCGGcCGacaGggGCGCg -3'
miRNA:   3'- -UGUCgCUCGuaGCCuGUag-CuuCGCG- -5'
33128 5' -53.7 NC_007497.1 + 27102 0.66 0.71739
Target:  5'- gGCAGCgGAGCGgauaCGGcCGcCGAuGCGCc -3'
miRNA:   3'- -UGUCG-CUCGUa---GCCuGUaGCUuCGCG- -5'
33128 5' -53.7 NC_007497.1 + 10005 0.67 0.706378
Target:  5'- aGCAGCGAcGCGUC--GCGUUGGAGgcCGCc -3'
miRNA:   3'- -UGUCGCU-CGUAGccUGUAGCUUC--GCG- -5'
33128 5' -53.7 NC_007497.1 + 25143 0.67 0.706378
Target:  5'- --uGCGGGCAUCGGGCAU---AGcCGUc -3'
miRNA:   3'- uguCGCUCGUAGCCUGUAgcuUC-GCG- -5'
33128 5' -53.7 NC_007497.1 + 25294 0.67 0.706378
Target:  5'- uCGGCGAGCgugccgauaaGUCGGAUAguugCGGuucaggacaucuAGCGUg -3'
miRNA:   3'- uGUCGCUCG----------UAGCCUGUa---GCU------------UCGCG- -5'
33128 5' -53.7 NC_007497.1 + 43103 0.67 0.695289
Target:  5'- uGCGGCGcuccAGCA-CGGACGggugCGcccAAGCGUg -3'
miRNA:   3'- -UGUCGC----UCGUaGCCUGUa---GC---UUCGCG- -5'
33128 5' -53.7 NC_007497.1 + 16150 0.67 0.695289
Target:  5'- --cGCGAGC-UCGGGCAUCua--CGCa -3'
miRNA:   3'- uguCGCUCGuAGCCUGUAGcuucGCG- -5'
33128 5' -53.7 NC_007497.1 + 14308 0.67 0.694176
Target:  5'- gGCGGCcGGUuucgaaCGGACGUCGGacgccaggcagccGGCGCc -3'
miRNA:   3'- -UGUCGcUCGua----GCCUGUAGCU-------------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.