miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33129 3' -51.6 NC_007497.1 + 21452 1.12 0.001149
Target:  5'- gGCGCGCUCGAGAACUGGAAACGCAACu -3'
miRNA:   3'- -CGCGCGAGCUCUUGACCUUUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 21693 0.76 0.308223
Target:  5'- cGC-CGCU-GAucGCUGGAAACGCAGCg -3'
miRNA:   3'- -CGcGCGAgCUcuUGACCUUUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 21626 0.76 0.324437
Target:  5'- aGCGCGCggGAGAGCUGGcggaauACGCuGACc -3'
miRNA:   3'- -CGCGCGagCUCUUGACCuu----UGCG-UUG- -5'
33129 3' -51.6 NC_007497.1 + 6825 0.74 0.395504
Target:  5'- -gGCGaUUCGucGAACUGGGAACGCAGu -3'
miRNA:   3'- cgCGC-GAGCu-CUUGACCUUUGCGUUg -5'
33129 3' -51.6 NC_007497.1 + 11426 0.73 0.434611
Target:  5'- gGCGUcuGCUCGAGAACaucgagcagcGGAucGCGCAGCu -3'
miRNA:   3'- -CGCG--CGAGCUCUUGa---------CCUu-UGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 9976 0.71 0.563553
Target:  5'- -aGCGUcCGAGGcgucGCUGGcguuGGCGCAGCa -3'
miRNA:   3'- cgCGCGaGCUCU----UGACCu---UUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 20400 0.71 0.586232
Target:  5'- uGCGCGCgaUCGAGGAC-GGA--CGCAu- -3'
miRNA:   3'- -CGCGCG--AGCUCUUGaCCUuuGCGUug -5'
33129 3' -51.6 NC_007497.1 + 11689 0.7 0.594214
Target:  5'- aGCGCGCagaUCGAcgccGAGCUGGccgacuacgcguccGAGCGuCAGCg -3'
miRNA:   3'- -CGCGCG---AGCU----CUUGACC--------------UUUGC-GUUG- -5'
33129 3' -51.6 NC_007497.1 + 27908 0.7 0.595355
Target:  5'- aGCGCGCgUCGAacgucauacccacGAGCgcagucaUGGAuAGCGCAGCu -3'
miRNA:   3'- -CGCGCG-AGCU-------------CUUG-------ACCU-UUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 6675 0.7 0.613661
Target:  5'- cGCGCGCUCGcgcaccgaaaaagacGGGuaaguuGAAACGCAACa -3'
miRNA:   3'- -CGCGCGAGC---------------UCUugac--CUUUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 44535 0.7 0.632011
Target:  5'- uGUGCgGCUCGAGGcAUUGGAGAgcCGCuuGGCa -3'
miRNA:   3'- -CGCG-CGAGCUCU-UGACCUUU--GCG--UUG- -5'
33129 3' -51.6 NC_007497.1 + 14400 0.7 0.643483
Target:  5'- uCGCGCUgGAGGAuCUGGu--CGguGCg -3'
miRNA:   3'- cGCGCGAgCUCUU-GACCuuuGCguUG- -5'
33129 3' -51.6 NC_007497.1 + 29782 0.69 0.652653
Target:  5'- cGgGCGCgagCGcGAACUGGucggucggagucGGCGCGACa -3'
miRNA:   3'- -CgCGCGa--GCuCUUGACCu-----------UUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 29036 0.69 0.677785
Target:  5'- cGCGCGcCUCGAGcagaaauuuGC-GGAAGCccgGCAGCa -3'
miRNA:   3'- -CGCGC-GAGCUCu--------UGaCCUUUG---CGUUG- -5'
33129 3' -51.6 NC_007497.1 + 18580 0.69 0.700437
Target:  5'- gGCGCGcCUCGuGGACacguccGGAAACGUcgGGCc -3'
miRNA:   3'- -CGCGC-GAGCuCUUGa-----CCUUUGCG--UUG- -5'
33129 3' -51.6 NC_007497.1 + 36762 0.68 0.733841
Target:  5'- cGCG-GUUCGGuGGCUGGGAugGgAGCu -3'
miRNA:   3'- -CGCgCGAGCUcUUGACCUUugCgUUG- -5'
33129 3' -51.6 NC_007497.1 + 9187 0.68 0.733841
Target:  5'- aGUGCGCaugUGAGGACUGucguAACGCuGCu -3'
miRNA:   3'- -CGCGCGa--GCUCUUGACcu--UUGCGuUG- -5'
33129 3' -51.6 NC_007497.1 + 40718 0.68 0.740414
Target:  5'- gGCGCGCgagcucaucgcggCGGuacgcGAGCgguucGGGGACGCGGCg -3'
miRNA:   3'- -CGCGCGa------------GCU-----CUUGa----CCUUUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 10530 0.68 0.741505
Target:  5'- cGCGCGcCUCGcAGAgcgucaucguuccgACguucGGAGACGguGCg -3'
miRNA:   3'- -CGCGC-GAGC-UCU--------------UGa---CCUUUGCguUG- -5'
33129 3' -51.6 NC_007497.1 + 17868 0.68 0.74911
Target:  5'- gGCGCGgUauGGAuGCUGGAAagcgaugcgcucaccGCGCAGCu -3'
miRNA:   3'- -CGCGCgAgcUCU-UGACCUU---------------UGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.