Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33129 | 5' | -56.4 | NC_007497.1 | + | 21488 | 1.12 | 0.000378 |
Target: 5'- aGCGCCGCGAGAUCGAGGCUCUCGAACa -3' miRNA: 3'- -CGCGGCGCUCUAGCUCCGAGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 28969 | 0.78 | 0.117588 |
Target: 5'- gGUGCCGUGAGAUCGuccuGGCUCagguuucggcggccgUUGAACa -3' miRNA: 3'- -CGCGGCGCUCUAGCu---CCGAG---------------AGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 18529 | 0.71 | 0.305131 |
Target: 5'- cGCGa-GCG-GGUCGAGGCgCUUGAGCc -3' miRNA: 3'- -CGCggCGCuCUAGCUCCGaGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 35070 | 0.71 | 0.305131 |
Target: 5'- cUGCCGCagccGAUCGAGGUcagCUUGAACa -3' miRNA: 3'- cGCGGCGcu--CUAGCUCCGa--GAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 27511 | 0.71 | 0.328552 |
Target: 5'- gGUGUugaCGUGcGcgCGAGGCUUUCGAGCg -3' miRNA: 3'- -CGCG---GCGCuCuaGCUCCGAGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 9940 | 0.71 | 0.344891 |
Target: 5'- uCGCgCGCGAGAcCGcggccgcgcaGGGCgagCUCGAGCg -3' miRNA: 3'- cGCG-GCGCUCUaGC----------UCCGa--GAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 20822 | 0.7 | 0.353276 |
Target: 5'- cGUGCCGa-AGuUCGAGGggCUCGAGCu -3' miRNA: 3'- -CGCGGCgcUCuAGCUCCgaGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 15271 | 0.69 | 0.410278 |
Target: 5'- aGCGCCGCGAGGcgcgcauccaguggaUCGAcuggauGCUCgaCGAGCc -3' miRNA: 3'- -CGCGGCGCUCU---------------AGCUc-----CGAGa-GCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 34508 | 0.69 | 0.434045 |
Target: 5'- uGCGCCGCGAucucugaacGAUUGAacgccgagugaugGGCaacggucgaUCUCGGGCg -3' miRNA: 3'- -CGCGGCGCU---------CUAGCU-------------CCG---------AGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 43994 | 0.69 | 0.435013 |
Target: 5'- gGCGCCgucgGCGuGAUCGAugccgcaugGGCUgcaaUCGAGCg -3' miRNA: 3'- -CGCGG----CGCuCUAGCU---------CCGAg---AGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 36792 | 0.68 | 0.464594 |
Target: 5'- cGCGCaGCG-GAUCGAgccagaacgcgcGGUcCUCGAGCa -3' miRNA: 3'- -CGCGgCGCuCUAGCU------------CCGaGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 21325 | 0.68 | 0.464594 |
Target: 5'- aGCGCgCGCGAGAUCGccgacaugaAGGCggccgccgCUCaGGCc -3' miRNA: 3'- -CGCG-GCGCUCUAGC---------UCCGa-------GAGcUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 15421 | 0.68 | 0.505591 |
Target: 5'- -gGCCGCGA---CGuGGCgCUCGAACc -3' miRNA: 3'- cgCGGCGCUcuaGCuCCGaGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 29548 | 0.67 | 0.526667 |
Target: 5'- gGCGuCCGCGGGAUgCGccacaggcgcggGGGCUUcaCGAGCu -3' miRNA: 3'- -CGC-GGCGCUCUA-GC------------UCCGAGa-GCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 44286 | 0.67 | 0.548064 |
Target: 5'- uCGCCGCGAGcgCugaugucgaaGAGGCUUaCGAc- -3' miRNA: 3'- cGCGGCGCUCuaG----------CUCCGAGaGCUug -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 33345 | 0.67 | 0.548064 |
Target: 5'- cGCaGCUGCGcGAuccgcugcUCGAuGUUCUCGAGCa -3' miRNA: 3'- -CG-CGGCGCuCU--------AGCUcCGAGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 27884 | 0.66 | 0.580638 |
Target: 5'- aGCGCaccgggaccUGCGAGAaCGAGcGCgcgUCGAACg -3' miRNA: 3'- -CGCG---------GCGCUCUaGCUC-CGag-AGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 23320 | 0.66 | 0.602581 |
Target: 5'- gGCGCUGCucu-UCGAGuugcguuuccaGUUCUCGAGCg -3' miRNA: 3'- -CGCGGCGcucuAGCUC-----------CGAGAGCUUG- -5' |
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33129 | 5' | -56.4 | NC_007497.1 | + | 42407 | 0.66 | 0.629042 |
Target: 5'- cGCGCCGgaUGuauuccuucaaucucGGAucgUCGAGGCcUUCGAACg -3' miRNA: 3'- -CGCGGC--GC---------------UCU---AGCUCCGaGAGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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