Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33132 | 3' | -64.4 | NC_007497.1 | + | 4290 | 0.67 | 0.208818 |
Target: 5'- aGCACG-GGCgGCUGGCUuuuGUG-CCCGg -3' miRNA: 3'- -CGUGCgCCGgCGGCCGG---CACuGGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 9634 | 0.67 | 0.20359 |
Target: 5'- aCACcCGGCgCGCCGGCCGcGACgUCGg -3' miRNA: 3'- cGUGcGCCG-GCGGCCGGCaCUG-GGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 13704 | 0.68 | 0.198476 |
Target: 5'- cGCAUG-GGUCGCCgcacgGGCCGcagggGACgCCGCa -3' miRNA: 3'- -CGUGCgCCGGCGG-----CCGGCa----CUG-GGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 27581 | 0.68 | 0.198476 |
Target: 5'- aCGCGuCGGCCGCCGaCUG-GAUCaCGCa -3' miRNA: 3'- cGUGC-GCCGGCGGCcGGCaCUGG-GUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 42575 | 0.68 | 0.188584 |
Target: 5'- cCugGCGGCCuGCCGuggcgaGCCGUGcuauuugcgcguGCCCGg -3' miRNA: 3'- cGugCGCCGG-CGGC------CGGCAC------------UGGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 10201 | 0.68 | 0.188584 |
Target: 5'- uGC-CGCGGUCGCgcaaaCGGCgGccGCCCGCg -3' miRNA: 3'- -CGuGCGCCGGCG-----GCCGgCacUGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 9905 | 0.68 | 0.174559 |
Target: 5'- -gACGCGaaucgccgggacGCCGUaugCGGCCGUGAUCgCGCg -3' miRNA: 3'- cgUGCGC------------CGGCG---GCCGGCACUGG-GUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 21289 | 0.68 | 0.170095 |
Target: 5'- gGCGCgGCGGCgggCGCCGGCguCGUGcACCUg- -3' miRNA: 3'- -CGUG-CGCCG---GCGGCCG--GCAC-UGGGug -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 33101 | 0.68 | 0.170095 |
Target: 5'- cGCGCGCccGGCUacucCCGGCCGUGccgguuccggGCCgCGCg -3' miRNA: 3'- -CGUGCG--CCGGc---GGCCGGCAC----------UGG-GUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 2544 | 0.68 | 0.170095 |
Target: 5'- gGCGUGCGcGCCGgCGGCCGcGGCgCAUc -3' miRNA: 3'- -CGUGCGC-CGGCgGCCGGCaCUGgGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 44643 | 0.68 | 0.169654 |
Target: 5'- gGCGCGaccCGGCCGCCgaugcugucgcggGGCUGUaGCCUGCc -3' miRNA: 3'- -CGUGC---GCCGGCGG-------------CCGGCAcUGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 13803 | 0.69 | 0.157309 |
Target: 5'- cGCAgG-GGCCGCCgcaugGGCCGcacggGACgCCGCa -3' miRNA: 3'- -CGUgCgCCGGCGG-----CCGGCa----CUG-GGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 43708 | 0.69 | 0.157309 |
Target: 5'- uCGCGCGcGCUGCCccUCGUGACCUGCc -3' miRNA: 3'- cGUGCGC-CGGCGGccGGCACUGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 27585 | 0.69 | 0.153244 |
Target: 5'- cGCGgGCGGCUGCggggCGGCCGcGauuccucucGCCCAUa -3' miRNA: 3'- -CGUgCGCCGGCG----GCCGGCaC---------UGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 12300 | 0.69 | 0.153244 |
Target: 5'- gGCGuCGCGGCCGCCG-CCGgcGGCaaCGCg -3' miRNA: 3'- -CGU-GCGCCGGCGGCcGGCa-CUGg-GUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 1145 | 0.69 | 0.149274 |
Target: 5'- uCGCGCGGaucaUGCCGGCC-UG-CCCAg -3' miRNA: 3'- cGUGCGCCg---GCGGCCGGcACuGGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 35966 | 0.69 | 0.149274 |
Target: 5'- cGC-CGCGGCCG-CGGCuuccgCGUauccgcgaagcGACCCGCg -3' miRNA: 3'- -CGuGCGCCGGCgGCCG-----GCA-----------CUGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 28776 | 0.69 | 0.149274 |
Target: 5'- cGCGCGCGGuaGCCcaaGGCCGguuuaucGGCgCGCa -3' miRNA: 3'- -CGUGCGCCggCGG---CCGGCa------CUGgGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 21047 | 0.69 | 0.145398 |
Target: 5'- -aGCGCGGCCGCCGGaaggggaaggGUGAaauCCCGa -3' miRNA: 3'- cgUGCGCCGGCGGCCgg--------CACU---GGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 40831 | 0.69 | 0.145398 |
Target: 5'- uGCA-GCGGCCGCCauGUCGUGAcgguuCCCAa -3' miRNA: 3'- -CGUgCGCCGGCGGc-CGGCACU-----GGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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