miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33133 3' -61.7 NC_007497.1 + 8907 0.66 0.266223
Target:  5'- cAGGGUaaUGCC-CGGCucCCCCAGCAGc -3'
miRNA:   3'- uUCCCG--ACGGcGUCGucGGGGUUGUU- -5'
33133 3' -61.7 NC_007497.1 + 42795 0.66 0.246244
Target:  5'- cAGGGGCUucGUCGCcuucgauacGCuGCCCCGACGc -3'
miRNA:   3'- -UUCCCGA--CGGCGu--------CGuCGGGGUUGUu -5'
33133 3' -61.7 NC_007497.1 + 34774 0.67 0.233627
Target:  5'- ------gGCCGCGGCGGCCuCCAACGc -3'
miRNA:   3'- uucccgaCGGCGUCGUCGG-GGUUGUu -5'
33133 3' -61.7 NC_007497.1 + 3847 0.67 0.221557
Target:  5'- uGGGGCuUGCgGCgucGGCAGCCUCGGuCAu -3'
miRNA:   3'- uUCCCG-ACGgCG---UCGUCGGGGUU-GUu -5'
33133 3' -61.7 NC_007497.1 + 2542 0.67 0.210023
Target:  5'- -cGGGCgUGCgCGcCGGCGGCCgCGGCGc -3'
miRNA:   3'- uuCCCG-ACG-GC-GUCGUCGGgGUUGUu -5'
33133 3' -61.7 NC_007497.1 + 10282 0.67 0.210023
Target:  5'- -cGGGCUGCC-CGGCA-UCCUGACGAc -3'
miRNA:   3'- uuCCCGACGGcGUCGUcGGGGUUGUU- -5'
33133 3' -61.7 NC_007497.1 + 23304 0.68 0.193695
Target:  5'- --aGGCUGCCaGCGGCAGCacgagCAGCAAa -3'
miRNA:   3'- uucCCGACGG-CGUCGUCGgg---GUUGUU- -5'
33133 3' -61.7 NC_007497.1 + 34307 0.68 0.188504
Target:  5'- -cGGGUUGUCG-AGCAGCCagaCGGCAGc -3'
miRNA:   3'- uuCCCGACGGCgUCGUCGGg--GUUGUU- -5'
33133 3' -61.7 NC_007497.1 + 13909 0.68 0.183436
Target:  5'- -uGGGUcGCCGCAGgGGCCgCCGcACGGg -3'
miRNA:   3'- uuCCCGaCGGCGUCgUCGG-GGU-UGUU- -5'
33133 3' -61.7 NC_007497.1 + 5010 0.68 0.178489
Target:  5'- --cGGCUGCuaCGCAGCAGauCCUCGACGAc -3'
miRNA:   3'- uucCCGACG--GCGUCGUC--GGGGUUGUU- -5'
33133 3' -61.7 NC_007497.1 + 21854 0.7 0.143018
Target:  5'- cGGGGGCgGCgaCGaCAGCGGCCCUGACu- -3'
miRNA:   3'- -UUCCCGaCG--GC-GUCGUCGGGGUUGuu -5'
33133 3' -61.7 NC_007497.1 + 21490 0.7 0.135215
Target:  5'- -cGuGCUGCCGCuGGCAGCCUgCAGCAGc -3'
miRNA:   3'- uuCcCGACGGCG-UCGUCGGG-GUUGUU- -5'
33133 3' -61.7 NC_007497.1 + 20789 0.81 0.017318
Target:  5'- uGGGGCUGCUGCGGCAGCCCUu---- -3'
miRNA:   3'- uUCCCGACGGCGUCGUCGGGGuuguu -5'
33133 3' -61.7 NC_007497.1 + 24002 1.03 0.000294
Target:  5'- gAAGGGCUGCCGCAGCAGCCCCAACAAc -3'
miRNA:   3'- -UUCCCGACGGCGUCGUCGGGGUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.