miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33134 3' -50.3 NC_007497.1 + 27974 0.66 0.934691
Target:  5'- gGUGAUCGCC-UCGAuguucaccGUGUCGGCGAu -3'
miRNA:   3'- gCGCUAGCGGcAGUUu-------UAUGGCUGCU- -5'
33134 3' -50.3 NC_007497.1 + 24909 0.66 0.929017
Target:  5'- uGCaGAUCGCUGUUGAccgccugGCCGACc- -3'
miRNA:   3'- gCG-CUAGCGGCAGUUuua----UGGCUGcu -5'
33134 3' -50.3 NC_007497.1 + 20595 0.66 0.929017
Target:  5'- cCGUGG-CGUCGUCGcuGAcGCUGACGGa -3'
miRNA:   3'- -GCGCUaGCGGCAGUu-UUaUGGCUGCU- -5'
33134 3' -50.3 NC_007497.1 + 29613 0.66 0.929017
Target:  5'- aCGcCGAUCgaGCCGUCcgccuGAAcGCCGAgCGAc -3'
miRNA:   3'- -GC-GCUAG--CGGCAGu----UUUaUGGCU-GCU- -5'
33134 3' -50.3 NC_007497.1 + 37037 0.66 0.929017
Target:  5'- aCGCuguacGUCGaCGUCAcGAUGCCGuCGAc -3'
miRNA:   3'- -GCGc----UAGCgGCAGUuUUAUGGCuGCU- -5'
33134 3' -50.3 NC_007497.1 + 18810 0.66 0.923046
Target:  5'- uGUGGUCGCUgcaGUCGGcgauUGCCGAgGGc -3'
miRNA:   3'- gCGCUAGCGG---CAGUUuu--AUGGCUgCU- -5'
33134 3' -50.3 NC_007497.1 + 13769 0.66 0.923046
Target:  5'- cCGCaugGGUCGCCG-CAGGG-GCCGcACGGg -3'
miRNA:   3'- -GCG---CUAGCGGCaGUUUUaUGGC-UGCU- -5'
33134 3' -50.3 NC_007497.1 + 14943 0.66 0.923046
Target:  5'- aCGCGG-CGCUGaUCAAA--GCCGGCc- -3'
miRNA:   3'- -GCGCUaGCGGC-AGUUUuaUGGCUGcu -5'
33134 3' -50.3 NC_007497.1 + 30640 0.66 0.916779
Target:  5'- uGCGAagCGCUGUCAugucAUCGGCGu -3'
miRNA:   3'- gCGCUa-GCGGCAGUuuuaUGGCUGCu -5'
33134 3' -50.3 NC_007497.1 + 7502 0.66 0.916779
Target:  5'- gGCGGUCaGUCGUCcGAG-AUCGACGc -3'
miRNA:   3'- gCGCUAG-CGGCAGuUUUaUGGCUGCu -5'
33134 3' -50.3 NC_007497.1 + 10098 0.66 0.916779
Target:  5'- uCGCGGcCGCCGagcgCGAAGUAgCGaucGCGAc -3'
miRNA:   3'- -GCGCUaGCGGCa---GUUUUAUgGC---UGCU- -5'
33134 3' -50.3 NC_007497.1 + 16240 0.66 0.914189
Target:  5'- uCGCGggCGCCcUCAcuuccacuacGCCGACGGc -3'
miRNA:   3'- -GCGCuaGCGGcAGUuuua------UGGCUGCU- -5'
33134 3' -50.3 NC_007497.1 + 37360 0.66 0.910215
Target:  5'- gGUG-UUGUCGUCGAGAU-CCGuCGAa -3'
miRNA:   3'- gCGCuAGCGGCAGUUUUAuGGCuGCU- -5'
33134 3' -50.3 NC_007497.1 + 17975 0.66 0.910215
Target:  5'- aCGCGAcaugaGCCGggcAAGUACgCGGCGAu -3'
miRNA:   3'- -GCGCUag---CGGCaguUUUAUG-GCUGCU- -5'
33134 3' -50.3 NC_007497.1 + 23478 0.66 0.903359
Target:  5'- uCGCGcgCGCUGaUC-AGGUGCaCGACGc -3'
miRNA:   3'- -GCGCuaGCGGC-AGuUUUAUG-GCUGCu -5'
33134 3' -50.3 NC_007497.1 + 28829 0.67 0.888779
Target:  5'- uCGcCGAgCGCUGUCAGccauuCCGGCGGu -3'
miRNA:   3'- -GC-GCUaGCGGCAGUUuuau-GGCUGCU- -5'
33134 3' -50.3 NC_007497.1 + 29385 0.67 0.888779
Target:  5'- uCGCGGcCGaCGUCGAGAaaACCGGCGu -3'
miRNA:   3'- -GCGCUaGCgGCAGUUUUa-UGGCUGCu -5'
33134 3' -50.3 NC_007497.1 + 13503 0.67 0.881066
Target:  5'- cCGCGAuauucggcuguUCGCCGUCu-GGUGCgCG-CGGa -3'
miRNA:   3'- -GCGCU-----------AGCGGCAGuuUUAUG-GCuGCU- -5'
33134 3' -50.3 NC_007497.1 + 30424 0.67 0.881066
Target:  5'- gGUGAUCguGCCGUUGAuGUcGCCGACa- -3'
miRNA:   3'- gCGCUAG--CGGCAGUUuUA-UGGCUGcu -5'
33134 3' -50.3 NC_007497.1 + 23354 0.67 0.881066
Target:  5'- aGCG--CGCCGUguGAAUgcuGCCGGCGc -3'
miRNA:   3'- gCGCuaGCGGCAguUUUA---UGGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.