miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33134 5' -58.2 NC_007497.1 + 32969 0.66 0.52052
Target:  5'- -aUCGUCA-CGUCGGCGACGGaacucauCGCUc -3'
miRNA:   3'- caGGCAGUcGCAGUCGCUGCU-------GCGGu -5'
33134 5' -58.2 NC_007497.1 + 44347 0.66 0.511129
Target:  5'- cUgCGUCGcGUGUCGcGaCGAUGACGCCu -3'
miRNA:   3'- cAgGCAGU-CGCAGU-C-GCUGCUGCGGu -5'
33134 5' -58.2 NC_007497.1 + 9995 0.66 0.500779
Target:  5'- --gCGUUGGCGcagCAGCGACG-CGUCGc -3'
miRNA:   3'- cagGCAGUCGCa--GUCGCUGCuGCGGU- -5'
33134 5' -58.2 NC_007497.1 + 26588 0.66 0.490523
Target:  5'- -cCCGUCuGCGcaaCAGCGACccaguCGCCGu -3'
miRNA:   3'- caGGCAGuCGCa--GUCGCUGcu---GCGGU- -5'
33134 5' -58.2 NC_007497.1 + 2919 0.66 0.490523
Target:  5'- uUCCGaacUGGCGUgaUGGCgGGCGGCGCCAu -3'
miRNA:   3'- cAGGCa--GUCGCA--GUCG-CUGCUGCGGU- -5'
33134 5' -58.2 NC_007497.1 + 25889 0.66 0.490523
Target:  5'- aGUCUGgacagCAGCGgaCAGCGuuGCGGuCGCCGa -3'
miRNA:   3'- -CAGGCa----GUCGCa-GUCGC--UGCU-GCGGU- -5'
33134 5' -58.2 NC_007497.1 + 29661 0.67 0.460364
Target:  5'- uUCCGcugCGGUGUUgagcuucggguAGCGGCG-CGCCAc -3'
miRNA:   3'- cAGGCa--GUCGCAG-----------UCGCUGCuGCGGU- -5'
33134 5' -58.2 NC_007497.1 + 3958 0.67 0.459375
Target:  5'- -aCCGUCacgacauGGCGgccgcugCAGCGACGcucCGCCGu -3'
miRNA:   3'- caGGCAG-------UCGCa------GUCGCUGCu--GCGGU- -5'
33134 5' -58.2 NC_007497.1 + 36819 0.67 0.450531
Target:  5'- gGUCCucgagCAGCGgcucgcgcaCAGCGACGguaACGCCGu -3'
miRNA:   3'- -CAGGca---GUCGCa--------GUCGCUGC---UGCGGU- -5'
33134 5' -58.2 NC_007497.1 + 15556 0.68 0.412396
Target:  5'- aUCUGgaUCGGCGcggCAGUGGCGAuCGCCc -3'
miRNA:   3'- cAGGC--AGUCGCa--GUCGCUGCU-GCGGu -5'
33134 5' -58.2 NC_007497.1 + 2446 0.68 0.412396
Target:  5'- -gCCGcUgGGCGUucgcgCGGCGACG-CGCCAu -3'
miRNA:   3'- caGGC-AgUCGCA-----GUCGCUGCuGCGGU- -5'
33134 5' -58.2 NC_007497.1 + 9413 0.68 0.376322
Target:  5'- cGUUgGUCgAGCGaacgaAGCGAcCGGCGCCAg -3'
miRNA:   3'- -CAGgCAG-UCGCag---UCGCU-GCUGCGGU- -5'
33134 5' -58.2 NC_007497.1 + 44302 0.69 0.359101
Target:  5'- -gCCGUUGGCGaUCAaccGCGGCGGUGCCGc -3'
miRNA:   3'- caGGCAGUCGC-AGU---CGCUGCUGCGGU- -5'
33134 5' -58.2 NC_007497.1 + 18317 0.69 0.3507
Target:  5'- -gCCGUCAGCG-CGGaaACGAUGCUg -3'
miRNA:   3'- caGGCAGUCGCaGUCgcUGCUGCGGu -5'
33134 5' -58.2 NC_007497.1 + 11723 0.69 0.3507
Target:  5'- cGUCCG--AGCGUCAGCGA-GAgGUCGc -3'
miRNA:   3'- -CAGGCagUCGCAGUCGCUgCUgCGGU- -5'
33134 5' -58.2 NC_007497.1 + 30002 0.69 0.342439
Target:  5'- -gCCGcCgAGCaGUCGGCGACGAgcaaGCCAg -3'
miRNA:   3'- caGGCaG-UCG-CAGUCGCUGCUg---CGGU- -5'
33134 5' -58.2 NC_007497.1 + 43260 0.69 0.342439
Target:  5'- aUCCGUCAucGCGauUCGGUGAcCGGCGCgGa -3'
miRNA:   3'- cAGGCAGU--CGC--AGUCGCU-GCUGCGgU- -5'
33134 5' -58.2 NC_007497.1 + 7024 0.69 0.334319
Target:  5'- uGUCCGUC-GCGaguUCGGCGGCccaauCGCCGu -3'
miRNA:   3'- -CAGGCAGuCGC---AGUCGCUGcu---GCGGU- -5'
33134 5' -58.2 NC_007497.1 + 7761 0.69 0.326341
Target:  5'- cGUCgaCGUaCAGCGuucgggUCAGCGGCG-CGCCGa -3'
miRNA:   3'- -CAG--GCA-GUCGC------AGUCGCUGCuGCGGU- -5'
33134 5' -58.2 NC_007497.1 + 21643 0.69 0.321623
Target:  5'- uUCCGgaagaucgucguuuaUCAGCGUgGGUucgccccuauuGACGACGCCGc -3'
miRNA:   3'- cAGGC---------------AGUCGCAgUCG-----------CUGCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.