Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33137 | 3' | -49.7 | NC_007497.1 | + | 24806 | 1.14 | 0.001347 |
Target: 5'- aGAUGCAUACACGCCAUACAUCGGUCCg -3' miRNA: 3'- -CUACGUAUGUGCGGUAUGUAGCCAGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 17613 | 0.77 | 0.354683 |
Target: 5'- --gGCAUGgACGgCGUGCugGUCGGUCCg -3' miRNA: 3'- cuaCGUAUgUGCgGUAUG--UAGCCAGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 2544 | 0.75 | 0.483446 |
Target: 5'- --gGCGUGCGCGCCGgcgGCcgCGGcgcaUCCu -3' miRNA: 3'- cuaCGUAUGUGCGGUa--UGuaGCC----AGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 5692 | 0.71 | 0.677119 |
Target: 5'- -uUGCGUuCAuUGCCAUuaGUCGGUCCu -3' miRNA: 3'- cuACGUAuGU-GCGGUAugUAGCCAGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 29530 | 0.71 | 0.688629 |
Target: 5'- --aGCAgucgaGCACGCCGUGCAgaaauucgCGG-CCa -3' miRNA: 3'- cuaCGUa----UGUGCGGUAUGUa-------GCCaGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 4757 | 0.71 | 0.700078 |
Target: 5'- --cGCGaACACGCCGgcCAUCaGGUUCg -3' miRNA: 3'- cuaCGUaUGUGCGGUauGUAG-CCAGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 942 | 0.7 | 0.722743 |
Target: 5'- cGAUGaucGCGCGCCGUACG-CGGUa- -3' miRNA: 3'- -CUACguaUGUGCGGUAUGUaGCCAgg -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 25011 | 0.7 | 0.733931 |
Target: 5'- cGGUGCGaccacuUGCAUGuCCGU-CGUCGGcUCCg -3' miRNA: 3'- -CUACGU------AUGUGC-GGUAuGUAGCC-AGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 24497 | 0.7 | 0.745005 |
Target: 5'- --aGC-UGCAUGUCGUGC-UCGGUCg -3' miRNA: 3'- cuaCGuAUGUGCGGUAUGuAGCCAGg -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 9625 | 0.7 | 0.766758 |
Target: 5'- cGAUGCuucacacccgGCGCGCCGgccgcgACGUCGG-CUg -3' miRNA: 3'- -CUACGua--------UGUGCGGUa-----UGUAGCCaGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 26161 | 0.7 | 0.766758 |
Target: 5'- -cUGCcccUGCACGCCGggacCGUCGG-CCg -3' miRNA: 3'- cuACGu--AUGUGCGGUau--GUAGCCaGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 43787 | 0.69 | 0.798195 |
Target: 5'- gGAUGCGgcuaucaGCugGCUcacggAUGCGUCGG-CCg -3' miRNA: 3'- -CUACGUa------UGugCGG-----UAUGUAGCCaGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 42055 | 0.68 | 0.82789 |
Target: 5'- -cUGCGUGCGC-UCAaGC-UCGGUCCc -3' miRNA: 3'- cuACGUAUGUGcGGUaUGuAGCCAGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 1452 | 0.68 | 0.82789 |
Target: 5'- --gGCGaucUGCACGCCGUGCuccgucUCGGUg- -3' miRNA: 3'- cuaCGU---AUGUGCGGUAUGu-----AGCCAgg -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 17820 | 0.68 | 0.864224 |
Target: 5'- --gGCG-ACACGCU-UACGUUGGUCg -3' miRNA: 3'- cuaCGUaUGUGCGGuAUGUAGCCAGg -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 12182 | 0.67 | 0.872656 |
Target: 5'- aGcgGCAUugGCGCCuguguUCGGUUg -3' miRNA: 3'- -CuaCGUAugUGCGGuauguAGCCAGg -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 41959 | 0.67 | 0.872656 |
Target: 5'- --aGCAUGCACGCgGUGCuggcgcaUGGUgCg -3' miRNA: 3'- cuaCGUAUGUGCGgUAUGua-----GCCAgG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 37825 | 0.67 | 0.872656 |
Target: 5'- -cUGUAUGCACGCC------UGGUCCu -3' miRNA: 3'- cuACGUAUGUGCGGuauguaGCCAGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 9741 | 0.67 | 0.880007 |
Target: 5'- --gGCAUGCGCGCgAUGCGcgaaagccUCGcgaugcaGUCCg -3' miRNA: 3'- cuaCGUAUGUGCGgUAUGU--------AGC-------CAGG- -5' |
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33137 | 3' | -49.7 | NC_007497.1 | + | 29520 | 0.67 | 0.88081 |
Target: 5'- -cUGgAUGCGCGCCucgcgGCGcUCGG-CCg -3' miRNA: 3'- cuACgUAUGUGCGGua---UGU-AGCCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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