miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33138 3' -56.1 NC_007497.1 + 36297 0.66 0.633357
Target:  5'- gGCAUcAUgUCGGCAACcuucaccuucgCGCCCUGCGc -3'
miRNA:   3'- -CGUGcUAgGGCUGUUGa----------GCGGGACGU- -5'
33138 3' -56.1 NC_007497.1 + 39051 0.66 0.632248
Target:  5'- gGUGCGGUugaauccCUCGACGGCUCgguGCCgUGCGa -3'
miRNA:   3'- -CGUGCUA-------GGGCUGUUGAG---CGGgACGU- -5'
33138 3' -56.1 NC_007497.1 + 23903 0.66 0.622266
Target:  5'- cGCACG-UCCUu-CGugUCGCCaUUGCAg -3'
miRNA:   3'- -CGUGCuAGGGcuGUugAGCGG-GACGU- -5'
33138 3' -56.1 NC_007497.1 + 44614 0.66 0.622266
Target:  5'- aGCuCGA-CCCGAcCAACauacagaCGCUCUGCAa -3'
miRNA:   3'- -CGuGCUaGGGCU-GUUGa------GCGGGACGU- -5'
33138 3' -56.1 NC_007497.1 + 34885 0.66 0.611184
Target:  5'- aUACGGcgUCCCGGCGAUUCGCgucccgauuuCCUGa- -3'
miRNA:   3'- cGUGCU--AGGGCUGUUGAGCG----------GGACgu -5'
33138 3' -56.1 NC_007497.1 + 6919 0.66 0.611184
Target:  5'- uGC-CGAUCCCGG----UCGCCCaggGCGa -3'
miRNA:   3'- -CGuGCUAGGGCUguugAGCGGGa--CGU- -5'
33138 3' -56.1 NC_007497.1 + 9854 0.66 0.600119
Target:  5'- cGCACaGGUCgCGACGGCcCGCUCgaaucugGCGa -3'
miRNA:   3'- -CGUG-CUAGgGCUGUUGaGCGGGa------CGU- -5'
33138 3' -56.1 NC_007497.1 + 23496 0.66 0.600119
Target:  5'- uGCACGAcgCCGGCGcccgccGCcgCGCCCaGCAg -3'
miRNA:   3'- -CGUGCUagGGCUGU------UGa-GCGGGaCGU- -5'
33138 3' -56.1 NC_007497.1 + 35842 0.66 0.589083
Target:  5'- uGCGCGAUgC--GCAGCacgUCGUCCUGCGc -3'
miRNA:   3'- -CGUGCUAgGgcUGUUG---AGCGGGACGU- -5'
33138 3' -56.1 NC_007497.1 + 16744 0.66 0.589083
Target:  5'- aGCAUGAcUCCCcACAACgaaaagaGCCCcGCAc -3'
miRNA:   3'- -CGUGCU-AGGGcUGUUGag-----CGGGaCGU- -5'
33138 3' -56.1 NC_007497.1 + 34296 0.67 0.582478
Target:  5'- cGUAUGcAUCCgCGACAucgcuugucgccgccGCUUGCgCCUGCu -3'
miRNA:   3'- -CGUGC-UAGG-GCUGU---------------UGAGCG-GGACGu -5'
33138 3' -56.1 NC_007497.1 + 5379 0.67 0.578083
Target:  5'- aCGCGuacgUCCGGCGcGCUCGCCCgUGUc -3'
miRNA:   3'- cGUGCua--GGGCUGU-UGAGCGGG-ACGu -5'
33138 3' -56.1 NC_007497.1 + 42859 0.67 0.578083
Target:  5'- -gAUGGcUCCCGAgAGCUUccaGCCUUGCGa -3'
miRNA:   3'- cgUGCU-AGGGCUgUUGAG---CGGGACGU- -5'
33138 3' -56.1 NC_007497.1 + 25535 0.67 0.578083
Target:  5'- aGCGcCGAUcaacgCCUGACGaaugaagaccugAC-CGCCCUGCAc -3'
miRNA:   3'- -CGU-GCUA-----GGGCUGU------------UGaGCGGGACGU- -5'
33138 3' -56.1 NC_007497.1 + 35578 0.67 0.578083
Target:  5'- cGCGCGAUCgCGuCGGCcaCGCCggGCAa -3'
miRNA:   3'- -CGUGCUAGgGCuGUUGa-GCGGgaCGU- -5'
33138 3' -56.1 NC_007497.1 + 42466 0.67 0.576986
Target:  5'- cGCGCGGaucguggUCCCGAaaaAGCUCaccguuGCCCgaGCAg -3'
miRNA:   3'- -CGUGCU-------AGGGCUg--UUGAG------CGGGa-CGU- -5'
33138 3' -56.1 NC_007497.1 + 21329 0.67 0.574792
Target:  5'- cGCGCGAgaUCgCCGACAugaaggcggccgccGCUCagGCCCagGCGa -3'
miRNA:   3'- -CGUGCU--AG-GGCUGU--------------UGAG--CGGGa-CGU- -5'
33138 3' -56.1 NC_007497.1 + 39260 0.67 0.567129
Target:  5'- -gGCGGUCCUGAUGgcGCUCGCCgaCUacGCAa -3'
miRNA:   3'- cgUGCUAGGGCUGU--UGAGCGG--GA--CGU- -5'
33138 3' -56.1 NC_007497.1 + 39155 0.67 0.567129
Target:  5'- uCGCGAcggCCCGACGcuuACUCGCUg-GCGg -3'
miRNA:   3'- cGUGCUa--GGGCUGU---UGAGCGGgaCGU- -5'
33138 3' -56.1 NC_007497.1 + 33100 0.67 0.556228
Target:  5'- uCGCGcgCCCGGCuACUCccgGCCgUGCc -3'
miRNA:   3'- cGUGCuaGGGCUGuUGAG---CGGgACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.