miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33139 5' -54.9 NC_007497.1 + 9182 0.66 0.67293
Target:  5'- aUCcgAG-UGCGCAUGUgaggACUGUCGUa -3'
miRNA:   3'- cAGuaUCuGCGCGUGCGa---UGACGGCA- -5'
33139 5' -54.9 NC_007497.1 + 8353 0.66 0.661684
Target:  5'- -gCcgAGcUGCGCGCGCagaugucgGCUGCCGa -3'
miRNA:   3'- caGuaUCuGCGCGUGCGa-------UGACGGCa -5'
33139 5' -54.9 NC_007497.1 + 22862 0.66 0.627815
Target:  5'- aUCGUu--CGCGCGCGCUGCga-CGUa -3'
miRNA:   3'- cAGUAucuGCGCGUGCGAUGacgGCA- -5'
33139 5' -54.9 NC_007497.1 + 38666 0.67 0.61652
Target:  5'- -gCGUGGGCGCGCgagcgcgguuacGCGCUugUcgagauuccgucGCCGg -3'
miRNA:   3'- caGUAUCUGCGCG------------UGCGAugA------------CGGCa -5'
33139 5' -54.9 NC_007497.1 + 16643 0.67 0.605239
Target:  5'- -gCGUGGcaacuCGCGCauGCGCUAC-GCCGg -3'
miRNA:   3'- caGUAUCu----GCGCG--UGCGAUGaCGGCa -5'
33139 5' -54.9 NC_007497.1 + 1082 0.67 0.582758
Target:  5'- gGUCAcgagGGGCaGCGCGCGCgaugaucACUGCaCGg -3'
miRNA:   3'- -CAGUa---UCUG-CGCGUGCGa------UGACG-GCa -5'
33139 5' -54.9 NC_007497.1 + 2427 0.67 0.560452
Target:  5'- gGUCGcgAGACGCGaGCGCUGCgaaacaugGCgGUg -3'
miRNA:   3'- -CAGUa-UCUGCGCgUGCGAUGa-------CGgCA- -5'
33139 5' -54.9 NC_007497.1 + 20566 0.67 0.560452
Target:  5'- aGUCGcgAGcuACGUGgggaGCGUUACUGCCGUg -3'
miRNA:   3'- -CAGUa-UC--UGCGCg---UGCGAUGACGGCA- -5'
33139 5' -54.9 NC_007497.1 + 2843 0.68 0.538387
Target:  5'- ------cGCGUGCAUGCUuCUGCCGUu -3'
miRNA:   3'- caguaucUGCGCGUGCGAuGACGGCA- -5'
33139 5' -54.9 NC_007497.1 + 2542 0.68 0.516627
Target:  5'- ----cGGGCGUGCGCGCcgGCgGCCGc -3'
miRNA:   3'- caguaUCUGCGCGUGCGa-UGaCGGCa -5'
33139 5' -54.9 NC_007497.1 + 36817 0.68 0.505879
Target:  5'- -aCAUGGAUGCGUugcuGCGCggcCUGCUGa -3'
miRNA:   3'- caGUAUCUGCGCG----UGCGau-GACGGCa -5'
33139 5' -54.9 NC_007497.1 + 21253 0.69 0.45371
Target:  5'- aUUGUGGAgCGCGCgcucauGCGCUACUGCUc- -3'
miRNA:   3'- cAGUAUCU-GCGCG------UGCGAUGACGGca -5'
33139 5' -54.9 NC_007497.1 + 43704 0.71 0.367815
Target:  5'- aUCAU---CGCGCGCGCUGCcccucgugaccUGCCGUg -3'
miRNA:   3'- cAGUAucuGCGCGUGCGAUG-----------ACGGCA- -5'
33139 5' -54.9 NC_007497.1 + 23113 0.76 0.186435
Target:  5'- cGUCGUAGuCGCGCuCGC-ACUGCUGg -3'
miRNA:   3'- -CAGUAUCuGCGCGuGCGaUGACGGCa -5'
33139 5' -54.9 NC_007497.1 + 25369 1.07 0.001047
Target:  5'- cGUCAUAGACGCGCACGCUACUGCCGUc -3'
miRNA:   3'- -CAGUAUCUGCGCGUGCGAUGACGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.