miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33140 5' -55.7 NC_007497.1 + 19185 0.66 0.679678
Target:  5'- cGcCGugGUCGAC-CCGAacaaCGGCGg -3'
miRNA:   3'- aCaGCugCGGCUGuGGCUaag-GUCGC- -5'
33140 5' -55.7 NC_007497.1 + 29869 0.66 0.673106
Target:  5'- cGUCGAuCGCaagaCGaACACCGGaggugagcaugaucgUUCCGGCa -3'
miRNA:   3'- aCAGCU-GCG----GC-UGUGGCU---------------AAGGUCGc -5'
33140 5' -55.7 NC_007497.1 + 30691 0.66 0.668716
Target:  5'- cGcCGGCGUCcACGCagcaGGUUUCAGCGu -3'
miRNA:   3'- aCaGCUGCGGcUGUGg---CUAAGGUCGC- -5'
33140 5' -55.7 NC_007497.1 + 40241 0.66 0.668716
Target:  5'- cGUCgGACGUCGGCAgacCCGccUUCaCGGCGu -3'
miRNA:   3'- aCAG-CUGCGGCUGU---GGCu-AAG-GUCGC- -5'
33140 5' -55.7 NC_007497.1 + 41231 0.66 0.668716
Target:  5'- cGUCGAauugaGCCGcGCcaaGCCGGUggUCAGCGc -3'
miRNA:   3'- aCAGCUg----CGGC-UG---UGGCUAa-GGUCGC- -5'
33140 5' -55.7 NC_007497.1 + 15193 0.66 0.668716
Target:  5'- -aUCGGCGUCGACGacuggaacgaauUCGGacCCAGCGg -3'
miRNA:   3'- acAGCUGCGGCUGU------------GGCUaaGGUCGC- -5'
33140 5' -55.7 NC_007497.1 + 8404 0.66 0.668716
Target:  5'- -uUUGACGCgGAguCGCCGA--UCAGCGa -3'
miRNA:   3'- acAGCUGCGgCU--GUGGCUaaGGUCGC- -5'
33140 5' -55.7 NC_007497.1 + 14286 0.66 0.657719
Target:  5'- aGUacaaGCCGugGCCGAU-CCAGgCGg -3'
miRNA:   3'- aCAgcugCGGCugUGGCUAaGGUC-GC- -5'
33140 5' -55.7 NC_007497.1 + 18005 0.66 0.646698
Target:  5'- -aUCGACGaCGGCGCgcaGAUUCagCAGCGg -3'
miRNA:   3'- acAGCUGCgGCUGUGg--CUAAG--GUCGC- -5'
33140 5' -55.7 NC_007497.1 + 27801 0.66 0.635664
Target:  5'- -aUCGaACGgCGGCAUCGAUUgCCAuGCGc -3'
miRNA:   3'- acAGC-UGCgGCUGUGGCUAA-GGU-CGC- -5'
33140 5' -55.7 NC_007497.1 + 44550 0.66 0.63456
Target:  5'- --cUGGCGCCGGCugcugagACUGAUcgCCGGCa -3'
miRNA:   3'- acaGCUGCGGCUG-------UGGCUAa-GGUCGc -5'
33140 5' -55.7 NC_007497.1 + 37045 0.66 0.624627
Target:  5'- cGUCGACGUcaCGAUGCCGucgaCGGCc -3'
miRNA:   3'- aCAGCUGCG--GCUGUGGCuaagGUCGc -5'
33140 5' -55.7 NC_007497.1 + 23119 0.66 0.624627
Target:  5'- aGUCG-CGCUcGCACUGcuggCCGGCGa -3'
miRNA:   3'- aCAGCuGCGGcUGUGGCuaa-GGUCGC- -5'
33140 5' -55.7 NC_007497.1 + 33406 0.66 0.623523
Target:  5'- ---gGGCGCCGcccgcccGCGuCCGAUgggCCAGCGc -3'
miRNA:   3'- acagCUGCGGC-------UGU-GGCUAa--GGUCGC- -5'
33140 5' -55.7 NC_007497.1 + 4200 0.67 0.613596
Target:  5'- cGUCGAUGgCGcGCGCCGGguauucccggUCCAuGCGc -3'
miRNA:   3'- aCAGCUGCgGC-UGUGGCUa---------AGGU-CGC- -5'
33140 5' -55.7 NC_007497.1 + 27306 0.67 0.613596
Target:  5'- cGUCuuaauGACGCCGuaGCGCgCGAUcccgucuucgUCCGGCa -3'
miRNA:   3'- aCAG-----CUGCGGC--UGUG-GCUA----------AGGUCGc -5'
33140 5' -55.7 NC_007497.1 + 6715 0.67 0.602581
Target:  5'- uUGUCGACGUCGuucucaACGUCGAUguggcgcagCCAGCa -3'
miRNA:   3'- -ACAGCUGCGGC------UGUGGCUAa--------GGUCGc -5'
33140 5' -55.7 NC_007497.1 + 8690 0.67 0.569726
Target:  5'- cGUCGACgGCCGGCGgCuAUUUCAacGCGg -3'
miRNA:   3'- aCAGCUG-CGGCUGUgGcUAAGGU--CGC- -5'
33140 5' -55.7 NC_007497.1 + 29383 0.67 0.569726
Target:  5'- cGUCG-CgGCCGACGUCGAgaaaaCCGGCGu -3'
miRNA:   3'- aCAGCuG-CGGCUGUGGCUaa---GGUCGC- -5'
33140 5' -55.7 NC_007497.1 + 5578 0.68 0.558865
Target:  5'- cGUCGGCGgCGGCcuGCUGAaUCCGGa- -3'
miRNA:   3'- aCAGCUGCgGCUG--UGGCUaAGGUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.