miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33141 3' -55.9 NC_007497.1 + 12003 0.66 0.617
Target:  5'- cGGGCGCucGCUcuguauCAGGAGUccgccgAGAACGCCg -3'
miRNA:   3'- cUCCGCG--CGG------GUCUUCA------UCUUGUGGa -5'
33141 3' -55.9 NC_007497.1 + 5777 0.66 0.605766
Target:  5'- cGAGGCcggcgacgaGUGCCCGGAAGagcUGGAAgACg- -3'
miRNA:   3'- -CUCCG---------CGCGGGUCUUC---AUCUUgUGga -5'
33141 3' -55.9 NC_007497.1 + 7196 0.66 0.605766
Target:  5'- cAGGUGCGCCgGGcAGGUGGuACuCCc -3'
miRNA:   3'- cUCCGCGCGGgUC-UUCAUCuUGuGGa -5'
33141 3' -55.9 NC_007497.1 + 31275 0.66 0.58338
Target:  5'- --cGCGCGCaCCAGAcGgcGAACAgCCg -3'
miRNA:   3'- cucCGCGCG-GGUCUuCauCUUGU-GGa -5'
33141 3' -55.9 NC_007497.1 + 255 0.66 0.58338
Target:  5'- -cGGCGCcaGCCCAGAAGccGGACGg-- -3'
miRNA:   3'- cuCCGCG--CGGGUCUUCauCUUGUgga -5'
33141 3' -55.9 NC_007497.1 + 12044 0.66 0.561162
Target:  5'- uGGGCGCGCCgaGGAAGcguu-CACCa -3'
miRNA:   3'- cUCCGCGCGGg-UCUUCaucuuGUGGa -5'
33141 3' -55.9 NC_007497.1 + 13079 0.67 0.517504
Target:  5'- -cGuGCGCGgCCAGAAGaAGAccacgcacgGCACCg -3'
miRNA:   3'- cuC-CGCGCgGGUCUUCaUCU---------UGUGGa -5'
33141 3' -55.9 NC_007497.1 + 32759 0.67 0.517504
Target:  5'- -cGGCGCGCCCAGcggcguucucGgcGGACuCCUg -3'
miRNA:   3'- cuCCGCGCGGGUCuu--------CauCUUGuGGA- -5'
33141 3' -55.9 NC_007497.1 + 43084 0.67 0.506795
Target:  5'- uGGGUGCGgCCGGGAGUGcuGCGCa- -3'
miRNA:   3'- cUCCGCGCgGGUCUUCAUcuUGUGga -5'
33141 3' -55.9 NC_007497.1 + 42257 0.67 0.506795
Target:  5'- -cGGCGCGCacgcccgggCAGAAGUGGcAGgACCg -3'
miRNA:   3'- cuCCGCGCGg--------GUCUUCAUC-UUgUGGa -5'
33141 3' -55.9 NC_007497.1 + 850 0.71 0.334748
Target:  5'- -uGGCGCGa--GGAAGaAGAGCACCUg -3'
miRNA:   3'- cuCCGCGCgggUCUUCaUCUUGUGGA- -5'
33141 3' -55.9 NC_007497.1 + 13528 0.76 0.146086
Target:  5'- -uGGUGCGCgCGGAAGgucGAACACCUg -3'
miRNA:   3'- cuCCGCGCGgGUCUUCau-CUUGUGGA- -5'
33141 3' -55.9 NC_007497.1 + 26223 1.08 0.000642
Target:  5'- cGAGGCGCGCCCAGAAGUAGAACACCUg -3'
miRNA:   3'- -CUCCGCGCGGGUCUUCAUCUUGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.